TkA02G424620 | RubberDandelionOmics

Gene overview

TkA02G424620

Reference: TK1151 Chr: Chr02 Coordinates: 107851571-107858466 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1582 bp · TkA02G424620|TK1151|cDNA

TGGATCTCGGTTGAAATTGTTTAGCCTTACCCACCTCCTCTTAATTTATTGGAAGAAAGAAAAAGGCAATAACAAGGGTTTCGTTTTCTCAACCATCATTTGCCTATTGGTTTCACCACCACCGTTCGCTTCCCCCACTGTCTTCTTCACTCTCTCGCCCAACCCAAAAAGATTCTTTCAGATTTTCTTTTTGGATCTATCATTTACCAATTCAAAATCCAATATACAGATCTTCTTATCAATTTATTGGCTAAGAAAAT...

CDS

Download CDS FASTA

942 bp · TkA02G424620|TK1151|CDS

ATGAGCTCGGCTCCAGTTGTCTCGAGCGCTAATGGCAACGTCGATGAATATATTACTCAGCTTATGCAATGCAAACCCTTATCCGAACAAGAGGTTAGGTTGTTATGTGAGAAGGCTAAGGAAATCTTGATGGTGGAAAGCAATGTACAGCCTGTTAAAAGCCCAGTGACAATCTGTGGTGATATTCATGGCCAATTCCATGATCTTGCAGAGCTTTTTCGAATTGGAGGGAAGTGTCCGGATACAAATTATTTATTCAT...

Protein

Download Protein FASTA

313 aa · TkA02G424620|TK1151|PROTEIN

MSSAPVVSSANGNVDEYITQLMQCKPLSEQEVRLLCEKAKEILMVESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNASVWKTFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHSNGLKLIARAHQLVMEGFNWGHEQKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G424620`
TK1151 ID	TkA02G424620
OH-1004 ID	LXL04_004294
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G424620

Location Chr02:107851571-107858466 (-)

Description Similar to PP2A: Serine/threonine-protein phosphatase PP2A catalytic subunit

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58500`	Functions redundantly with PP2A3, and is involved in establishing auxin gradients, apical-basal axis of polarity and root and shoot apical meristem during embryogenesis.	No verified direct reference in this release
`At2g42500`	Functions redundantly with PP2A4, and is involved in establishing auxin gradients, apical-basal axis of polarity and root and shoot apical meristem during embryogenesis.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XN40`	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit.	No verified direct reference in this release
`Os03g0805300`	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004294 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0006470 protein dephosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0048364 root development Biological Process

GO:0048863 stem cell differentiation Biological Process

GO:0080022 primary root development Biological Process

GO:0000159 protein phosphatase type 2A complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004721 phosphoprotein phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT2G42500

ath:AT3G58500

dosa:Os03g0805300

nta:107779504

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.738

Rank 1 · TkA02G424620 · TK1151

Nucleus0.520

Rank 2 · TkA02G424620 · TK1151

Mitochondrion0.058

Rank 3 · TkA02G424620 · TK1151

Cell membrane0.055

Rank 4 · TkA02G424620 · TK1151

Peroxisome0.038

Rank 5 · TkA02G424620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16891STPPase_N25-44 aa

PF00149Metallophos55-248 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G424620	`PF16891`	STPPase_N	25	44	0.00013	23.1
TkA02G424620	`PF00149`	Metallophos	55	248	3e-47	162.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P48578`	Arabidopsis thaliana	sp\|P48578\|PP2A4_ARATH Serine/threonine-protein phosphatase PP2A-4 catalytic subunit	94.400%	Swiss-Prot	High
`Q07100`	Arabidopsis thaliana	sp\|Q07100\|PP2A3_ARATH Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	95.200%	Swiss-Prot	High
`A2XN40`	Oryza sativa subsp. indica	sp\|A2XN40\|PP2A2_ORYSI Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	93.200%	Swiss-Prot	High
`Q10BT5`	Oryza sativa subsp. japonica	sp\|Q10BT5\|PP2A2_ORYSJ Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	93.200%	Swiss-Prot	High

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