TkA02G406800 | RubberDandelionOmics

Gene overview

TkA02G406800

Reference: TK1151 Chr: Chr02 Coordinates: 103433615-103434670 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1026 bp · TkA02G406800|TK1151|cDNA

ATGAATTTGGCCATCGGAACTCCCCCAGAAAAGTTCTCAGCCATCATGGATACAGGTAGTGACCTCATTTGGACACAATGTAAGCCATGCACCAAATGTTTTGATGCACCAACACCAATTTTTGATCCAAAGAAGTCGTCTTCATTCTCGAAGGTCCCATGTTCAAATAGTTTATGCAAGGCGTTACCAACTTCCGATTGTGGATCGGATGGGTGCGAGTATTTGTATTCTTACGGCGATTACTCGTCAACACAAGGAAT...

CDS

Download CDS FASTA

1026 bp · TkA02G406800|TK1151|CDS

ATGAATTTGGCCATCGGAACTCCCCCAGAAAAGTTCTCAGCCATCATGGATACAGGTAGTGACCTCATTTGGACACAATGTAAGCCATGCACCAAATGTTTTGATGCACCAACACCAATTTTTGATCCAAAGAAGTCGTCTTCATTCTCGAAGGTCCCATGTTCAAATAGTTTATGCAAGGCGTTACCAACTTCCGATTGTGGATCGGATGGGTGCGAGTATTTGTATTCTTACGGCGATTACTCGTCAACACAAGGAAT...

Protein

Download Protein FASTA

341 aa · TkA02G406800|TK1151|PROTEIN

MNLAIGTPPEKFSAIMDTGSDLIWTQCKPCTKCFDAPTPIFDPKKSSSFSKVPCSNSLCKALPTSDCGSDGCEYLYSYGDYSSTQGILATETFMFDKVSVPSLGFGCGEDNEGSGFNQGGGLVGLGRGPLSLVSQLKKSTFSYCLTSMNDDTSSGSLVSDIANDSVLTTPLIKNPSQPSFYYLSLQGISVGNVDLPIKKSTFAINSDGGGGVIIDSGTTITYLEESAFEMLKKEFISQTKLNVDNSGSTGLDLCFELPSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G406800`
TK1151 ID	TkA02G406800
OH-1004 ID	LXL04_014644
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	96.900
Protein coverage (%)	TK1151 100.000 / OH-1004 76.638 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G406800

Location Chr02:103433615-103434670 (+)

Description Similar to nep1: Aspartic proteinase nepenthesin-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01300`	Aspartyl protease.	No verified direct reference in this release
`At2g35615`	Probable aspartic protease At2g35615.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0448500`	Anther-specific aspartic protease involved in tapetal programmed cell death (PCD).	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.2013 · DOI: 10.1038/ncomms2396

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014644 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0043067 regulation of programmed cell death Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G01300

ath:AT3G20015

dosa:Os04g0448500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.575

Rank 1 · TkA02G406800 · TK1151

Lysosome / Vacuole0.101

Rank 2 · TkA02G406800 · TK1151

Cell membrane0.100

Rank 3 · TkA02G406800 · TK1151

Endoplasmic reticulum0.097

Rank 4 · TkA02G406800 · TK1151

Cytoplasm0.088

Rank 5 · TkA02G406800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N1-157 aa

PF00026Asp2-333 aa

PF14541TAXi_C181-333 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G406800	`PF14543`	TAXi_N	1	157	5.6e-48	164.2
TkA02G406800	`PF00026`	Asp	2	333	4.8e-20	73.0
TkA02G406800	`PF14541`	TAXi_C	181	333	2.8e-33	115.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LNJ3`	Arabidopsis thaliana	sp\|Q9LNJ3\|APF2_ARATH Aspartyl protease family protein 2	39.400%	Swiss-Prot	Medium
`Q3EBM5`	Arabidopsis thaliana	sp\|Q3EBM5\|ASPR1_ARATH Probable aspartic protease At2g35615	39.700%	Swiss-Prot	Medium
`Q7XV21`	Oryza sativa subsp. japonica	sp\|Q7XV21\|AP37_ORYSJ Aspartyl protease 37	35.100%	Swiss-Prot	Medium

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