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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G405970
Reference: TK1151 Chr: Chr02 Coordinates: 103163713-103170029 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2841 bp · TkA02G405970|TK1151|cDNA

AAACCGTATTATTGGAGAAGCTCTAAACCGCAATGTACGGTCGATTTAACCCCCGGTCCGGTCCTATCGGTCGTACAAAATCGAGTGTTTGGGTTTCGCCTCTTCGCTCCCTTCTTCTCCCCCGATACTCATCCAAATCAAAATCTTCAACCTGATTGTTCGAAAATTCAATCTAAACGAATGGGGCCTCCTATCAGACAGAACAAGCAGGCTTTCGGTGCTGCTAATGCTATCGGGAAGCAAAACCTATTCGATTCATC...

CDS

Download CDS FASTA

2499 bp · TkA02G405970|TK1151|CDS

AAACCGTATTATTGGAGAAGCTCTAAACCGCAATGTACGGTCGATTTAACCCCCGGTCCGGTCCTATCGGTCGTACAAAATCGAGTGTTTGGGTTTCGCCTCTTCGCTCCCTTCTTCTCCCCCGATACTCATCCAAATCAAAATCTTCAACCTGATTGTTCGAAAATTCAATCTAAACGAATGGGGCCTCCTATCAGACAGAACAAGCAGGCTTTCGGTGCTGCTAATGCTATCGGGAAGCAAAACCTATTCGATTCATC...

Protein

Download Protein FASTA

832 aa · TkA02G405970|TK1151|PROTEIN

KPYYWRSSKPQCTVDLTPGPVLSVVQNRVFGFRLFAPFFSPDTHPNQNLQPDCSKIQSKRMGPPIRQNKQAFGAANAIGKQNLFDSSSEAMFNNLWVGNLAADVTDSDLRNLFEKHGVVDTVTCYPSRSYAFINMKRPEDAKRAKESLQGFVLRGSALKIDFAKPAKPCKSLWVSGISVSTTREDLEEEFSKFGKIEDFKFIRDKNTAYIDYSRLDDASKALKTMHGKKRGGSVIRVDYLRSQPKRDQGPDPRDGKEGQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G405970
TK1151 IDTkA02G405970
OH-1004 IDLXL04_017681
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)29.300
Protein coverage (%)TK1151 51.322 / OH-1004 67.391
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G405970
LocationChr02:103163713-103170029 (-)
DescriptionSimilar to FPA: Flowering time control protein FPA
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g43410 Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017681 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0000395 mRNA 5'-splice site recognition Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0001510 RNA methylation Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006406 mRNA export from nucleus Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009908 flower development Biological Process
GO:0009911 positive regulation of flower development Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
KEGG gene cross-reference
ath:AT2G43410
hsa:29890
spo:2540865
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.833
Rank 1 · TkA02G405970 · TK1151
Cytoplasm0.271
Rank 2 · TkA02G405970 · TK1151
Cell membrane0.051
Rank 3 · TkA02G405970 · TK1151
Endoplasmic reticulum0.039
Rank 4 · TkA02G405970 · TK1151
Lysosome / Vacuole0.018
Rank 5 · TkA02G405970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25701RRM_YTH194-149 aa
PF00076RRM_195-158 aa
PF28976RRM_ACIN196-151 aa
PF23085RRM_PARP14_396-143 aa
PF13893RRM_597-165 aa
PF16842RRM_occluded99-160 aa
PF08777RRM_3101-149 aa
PF08675RNA_bind106-144 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G405970PF25701RRM_YTH1941490.01815.6
TkA02G405970PF00076RRM_1951584.4e-37126.5
TkA02G405970PF28976RRM_ACIN1961514.1e-0627.5
TkA02G405970PF23085RRM_PARP14_3961432.1e-0525.2
TkA02G405970PF13893RRM_5971654.1e-0627.2
TkA02G405970PF16842RRM_occluded991602.8e-0731.0
TkA02G405970PF08777RRM_31011496.6e-0626.9
TkA02G405970PF08675RNA_bind1061440.03115.0
TkA02G405970PF05172RRM_Nup351101550.0215.5
TkA02G405970PF14605Nup35_RRM_21131443.9e-0524.2
TkA02G405970PF29396F07F6_N1321650.02515.0
TkA02G405970PF29326RRM_MUD2_C1321510.2911.9
TkA02G405970PF23085RRM_PARP14_31692262.1e-0525.2
TkA02G405970PF25701RRM_YTH11712280.01815.6
TkA02G405970PF00076RRM_11722364.4e-37126.5
TkA02G405970PF08777RRM_31732256.6e-0626.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPQ9Arabidopsis thalianasp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA37.300%Swiss-ProtMedium

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