TkA02G402980 | RubberDandelionOmics

Gene overview

TkA02G402980

Reference: TK1151 Chr: Chr02 Coordinates: 102351078-102360887 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1545 bp · TkA02G402980|TK1151|cDNA

TCGAGGCTGACTGATGTCCCTCATGATCTGATCCGGGACTGTTGGGGTGACCCAGATGTGGACCTGGAATTTGTAGGGTGCACAGGAAGATCTGGGGGTATTGTTATCATGTGGGACAAACGGGTCTTCCAAAAAATAACGACAATTAAAGCAATGAACTTCTTGGCGGTGGTAGGATATTGGTCGGGTATCGTGGGGGAAACAATTTTGGTGAATGTTTATGCGCCGCAGCCACTGGCTGATAAAAAGTTGTTATGGTC...

CDS

Download CDS FASTA

1545 bp · TkA02G402980|TK1151|CDS

TCGAGGCTGACTGATGTCCCTCATGATCTGATCCGGGACTGTTGGGGTGACCCAGATGTGGACCTGGAATTTGTAGGGTGCACAGGAAGATCTGGGGGTATTGTTATCATGTGGGACAAACGGGTCTTCCAAAAAATAACGACAATTAAAGCAATGAACTTCTTGGCGGTGGTAGGATATTGGTCGGGTATCGTGGGGGAAACAATTTTGGTGAATGTTTATGCGCCGCAGCCACTGGCTGATAAAAAGTTGTTATGGTC...

Protein

Download Protein FASTA

514 aa · TkA02G402980|TK1151|PROTEIN

SRLTDVPHDLIRDCWGDPDVDLEFVGCTGRSGGIVIMWDKRVFQKITTIKAMNFLAVVGYWSGIVGETILVNVYAPQPLADKKLLWSRLLNLMTSRPGNWIFFGDFNSVRRQEERFNSSFCPYTAVAFNKFIHETDLQDLNMGGRRFTYFCDDGLKLNKLDRFLLRDGFDNIVISAWSNVQFDDSADKVLALKLKAVKSAIKNWRSIEFEKEGKELRESKNRIRSLDQAAEERCLSELERLEIKEGKQRVLELERMLKLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G402980`
TK1151 ID	TkA02G402980
OH-1004 ID	LXL04_006182
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.500
Protein coverage (%)	TK1151 100.000 / OH-1004 24.456 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G402980`
Location	Chr02:102351078-102360887 (-)
Description	Similar to mcd4: GPI ethanolamine phosphate transferase 1 (Aspergillus oryzae (strain ATCC 42149 / RIB 40)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006182` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006506 GPI anchor biosynthetic process Biological Process GO:0071555 cell wall organization Biological Process GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0051377 mannose-ethanolamine phosphotransferase activity Molecular Function
KEGG gene cross-reference	afm:AFUA_4G03970 aor:AO090011000320 hsa:23556 ncr:NCU07999 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.616

Rank 1 · TkA02G402980 · TK1151

Nucleus0.364

Rank 2 · TkA02G402980 · TK1151

Cell membrane0.071

Rank 3 · TkA02G402980 · TK1151

Plastid0.060

Rank 4 · TkA02G402980 · TK1151

Endoplasmic reticulum0.034

Rank 5 · TkA02G402980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03372Exo_endo_phos29-169 aa

PF14529Exo_endo_phos_270-149 aa

PF08286Spc24214-289 aa

PF08286Spc24342-372 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G402980	`PF03372`	Exo_endo_phos	29	169	0.00038	21.0
TkA02G402980	`PF14529`	Exo_endo_phos_2	70	149	0.035	14.7
TkA02G402980	`PF08286`	Spc24	214	289	0.58	11.1
TkA02G402980	`PF08286`	Spc24	342	372	0.58	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card