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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G402750
Reference: TK1151 Chr: Chr02 Coordinates: 102280820-102284161 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3342 bp · TkA02G402750|TK1151|cDNA

ATGGCTGTCATTACACTTTGCTCCTCCTCCACAATTTACTCTATCAACCGCCACTTAACTTGCCATACTGCTACTGATAGCTCAACAAGTTATACCTTATCGCTAAAATATTCTAAATGCTTCACATTGTCAAAGAATTCGACTGCCCCATCTGGGTCGATGGTCGAATGGAAGAAACACAGGAGAAAAGTTGTGGGTATTTGTGGAGTTGTGATTAGAAGTTCGTTGGATGATGCTAAGTCGATGGAAATTGGGAACCG...

CDS

Download CDS FASTA

3342 bp · TkA02G402750|TK1151|CDS

ATGGCTGTCATTACACTTTGCTCCTCCTCCACAATTTACTCTATCAACCGCCACTTAACTTGCCATACTGCTACTGATAGCTCAACAAGTTATACCTTATCGCTAAAATATTCTAAATGCTTCACATTGTCAAAGAATTCGACTGCCCCATCTGGGTCGATGGTCGAATGGAAGAAACACAGGAGAAAAGTTGTGGGTATTTGTGGAGTTGTGATTAGAAGTTCGTTGGATGATGCTAAGTCGATGGAAATTGGGAACCG...

Protein

Download Protein FASTA

1113 aa · TkA02G402750|TK1151|PROTEIN

MAVITLCSSSTIYSINRHLTCHTATDSSTSYTLSLKYSKCFTLSKNSTAPSGSMVEWKKHRRKVVGICGVVIRSSLDDAKSMEIGNRNNSEEENTRVLKSISDPSEALSYFKSASELPNLVHNTESCNYMLELLRVNRRIDDMAGVFDVMQKQIIYRNLTTYMIIFKSLGIRGGIRQAPFALSQMRKSGFVLNAYSYNGLIDLLLKSGFSKEAYEVYKRMVSEEIKPSLKTYSALMVALGKRRDTEKVMGLLKDMEVLGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G402750
TK1151 IDTkA02G402750
OH-1004 IDLXL04_031423
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)27.500
Protein coverage (%)TK1151 14.286 / OH-1004 10.818
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G402750
LocationChr02:102280820-102284161 (+)
DescriptionSimilar to At1g74580: Putative pentatricopeptide repeat-containing protein At1g74580
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g31850 Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex.
PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02035.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031423 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G74580
ath:AT1G74600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.645
Rank 1 · TkA02G402750 · TK1151
Plastid0.244
Rank 2 · TkA02G402750 · TK1151
Nucleus0.054
Rank 3 · TkA02G402750 · TK1151
Cytoplasm0.029
Rank 4 · TkA02G402750 · TK1151
Cell membrane0.011
Rank 5 · TkA02G402750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13424TPR_1298-117 aa
PF00515TPR_1102-116 aa
PF01535PPR103-112 aa
PF14559TPR_19103-115 aa
PF13041PPR_2123-169 aa
PF13812PPR_3123-170 aa
PF01535PPR126-152 aa
PF23276TPR_24138-218 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G402750PF13424TPR_12981178.2e-0523.4
TkA02G402750PF00515TPR_11021160.003517.8
TkA02G402750PF01535PPR1031124.9e-152484.8
TkA02G402750PF14559TPR_191031152.5e-1041.3
TkA02G402750PF13041PPR_21231693.9e-216699.9
TkA02G402750PF13812PPR_31231701.3e-117384.6
TkA02G402750PF01535PPR1261524.9e-152484.8
TkA02G402750PF23276TPR_241382183.1e-52176.7
TkA02G402750PF01535PPR1611904.9e-152484.8
TkA02G402750PF23276TPR_241812903.1e-52176.7
TkA02G402750PF13041PPR_21822043.9e-216699.9
TkA02G402750PF13812PPR_31832421.3e-117384.6
TkA02G402750PF17177PPR_long1833381.1e-59202.1
TkA02G402750PF12854PPR_11892214e-165535.9
TkA02G402750PF10037MRP-S271892241.5e-1247.9
TkA02G402750PF13041PPR_21932393.9e-216699.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZ52Arabidopsis thalianasp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic55.500%Swiss-ProtLow

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