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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_031423
Reference: OH-1004 Chr: Chr07 Coordinates: 5747028-5752515 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4440 bp · LXL04_031423|LXL04_031423|OH1004|cDNA

ATGAGGCGCAATTTGCTTACAAAACATGTAGCTGCTGTTGTGAAATACCAAAAAGACCCAATTAGAGCCCTAGAAATGTTCAATTCTGCGAAAAAAGAAGACGGGTTTAAGCATAATCTGGTAACTTACAAGTGTATGATTGAAAACCTCGGTAGTCATGGCAAGTTTGAAGCAATGGAAGGTGTGTTTGCAGAGATGAGGGCGGATATTGATAGTTGTTTATCAGAAGGAGCTTATGTATCCGCCATGAAAAGCTACGG...

CDS

Download CDS FASTA

4440 bp · LXL04_031423|LXL04_031423|OH1004|CDS

ATGAGGCGCAATTTGCTTACAAAACATGTAGCTGCTGTTGTGAAATACCAAAAAGACCCAATTAGAGCCCTAGAAATGTTCAATTCTGCGAAAAAAGAAGACGGGTTTAAGCATAATCTGGTAACTTACAAGTGTATGATTGAAAACCTCGGTAGTCATGGCAAGTTTGAAGCAATGGAAGGTGTGTTTGCAGAGATGAGGGCGGATATTGATAGTTGTTTATCAGAAGGAGCTTATGTATCCGCCATGAAAAGCTACGG...

Protein

Download Protein FASTA

1479 aa · LXL04_031423|LXL04_031423|OH1004|PROTEIN

MRRNLLTKHVAAVVKYQKDPIRALEMFNSAKKEDGFKHNLVTYKCMIENLGSHGKFEAMEGVFAEMRADIDSCLSEGAYVSAMKSYGRKGKVQEAVNVFERMDFYNCEPGVHSYNAIMNILVEYGYFDQAHKVYMRMKDKGIVPDVYTFTIRIKSFCRTKRSVAALRLLKNMPASGCELNAVTYCTVISGFYEENNQPEAYQLFDEMLKRSIFPDIVTFNKLIHILCKKGDVQESERLFNKVLKRGISPNVFTFNVFIQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_031423
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_031423
LocationChr07:5747028-5752515 (+)
DescriptionSimilar to At1g74580: Putative pentatricopeptide repeat-containing protein At1g74580
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74580 Putative pentatricopeptide repeat-containing protein At1g74580. No verified direct reference in this release
At1g74600 Pentatricopeptide repeat-containing protein At1g74600, chloroplastic. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At4g39530 Pentatricopeptide repeat-containing protein At4g39530. No verified direct reference in this release
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031423 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G74580
ath:AT1G74600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.746
Rank 1 · LXL04_031423 · OH-1004
Plastid0.142
Rank 2 · LXL04_031423 · OH-1004
Nucleus0.050
Rank 3 · LXL04_031423 · OH-1004
Cytoplasm0.030
Rank 4 · LXL04_031423 · OH-1004
Cell membrane0.008
Rank 5 · LXL04_031423 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177.11PPR_long17-144 aa
PF13041.13PPR_279-119 aa
PF13812.13PPR_380-122 aa
PF13041.13PPR_2109-158 aa
PF29070.1MSC6_N114-197 aa
PF23276.3TPR_24125-241 aa
PF12854.14PPR_1140-172 aa
PF17177.11PPR_long149-281 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_031423PF17177.11PPR_long171445.4e-39134.5
LXL04_031423PF13041.13PPR_2791198.9e-201650.8
LXL04_031423PF13812.13PPR_3801221.2e-84279.1
LXL04_031423PF13041.13PPR_21091588.9e-201650.8
LXL04_031423PF29070.1MSC6_N1141971.9e-46159.6
LXL04_031423PF23276.3TPR_241252411.4e-45155.2
LXL04_031423PF12854.14PPR_11401721e-183595.4
LXL04_031423PF17177.11PPR_long1492815.4e-39134.5
LXL04_031423PF13041.13PPR_21531918.9e-201650.8
LXL04_031423PF13812.13PPR_31672251.2e-84279.1
LXL04_031423PF12854.14PPR_11762071e-183595.4
LXL04_031423PF29070.1MSC6_N1782751.9e-46159.6
LXL04_031423PF13041.13PPR_21822208.9e-201650.8
LXL04_031423PF13812.13PPR_32032591.2e-84279.1
LXL04_031423PF12854.14PPR_12112411e-183595.4
LXL04_031423PF13041.13PPR_22142638.9e-201650.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CA58Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g7458056.192%Swiss-Protmoderate database homology
Q9CA56Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g74600, chloroplastic44.618%Swiss-Protweak database homology
Q9SVP7Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1365032.436%Swiss-Protweak database homology
Q9SVA5Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g3953032.222%Swiss-Protweak database homology
Q9ZUW3Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g2761031.773%Swiss-Protweak database homology

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