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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G399920
Reference: TK1151 Chr: Chr02 Coordinates: 101553197-101556968 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2338 bp · TkA02G399920|TK1151|cDNA

ACCCTTTAACATAGTATCTATATTACATGATAGAAAAGTAATATATGATCTTGAAAGTCAAATATAATTTATTATAATTGGTAAAAAAGGTGTAAAGAAACTTGATTAAACGGGAAAGAGTTATAAAAATTTGGAACCTATAAATCCTTTTAACCCTAAAAGAAAATCCTGAATGAAGGTGTGGTGAACTAAAATCCACCATTTCCATCCCTACAATCCCTCTCCAACATTCACCCATGCTTTCATCTCTTTCTCTCTAA...

CDS

Download CDS FASTA

1617 bp · TkA02G399920|TK1151|CDS

ATGGGGAACTGTTGTTCCCTAATTCACGCCAGAAGAAAACATGGAGACCCTGAATCCAAGCAAGCCCTAAAAGGAGACAACAAACCGCAAGAAGAAAAGAAAAACACAACCACCGCCCCCCCAAAACCCGTCACCGCCTCATCCGCCACCACAGCTGCTCAGCCACCGAAGAATGGCAACAACAAATCCGGTAGCGGGACGGTTTTGGGGCGTCCAATGGAAGACATTCGAACTCTCTACACCATCGGGAAGGAGCTTGG...

Protein

Download Protein FASTA

538 aa · TkA02G399920|TK1151|PROTEIN

MGNCCSLIHARRKHGDPESKQALKGDNKPQEEKKNTTTAPPKPVTASSATTAAQPPKNGNNKSGSGTVLGRPMEDIRTLYTIGKELGRGQFGVTHLCTCKQTGKQLACKTIAKRKLANKEDIEDVRREVQIMHHLAGQPNIVELKGAFEDKHSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVRIIHTCHSMGVIHRDLKPENFLLQSTDEDAPLLATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRKYGPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G399920
TK1151 IDTkA02G399920
OH-1004 IDLXL04_005801
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)73.900
Protein coverage (%)TK1151 85.502 / OH-1004 86.932
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G399920
LocationChr02:101553197-101556968 (+)
DescriptionSimilar to CPK1: Calcium-dependent protein kinase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g12180 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
At5g19360 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0808400 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Os05g0491900 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Os11g0136600 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005801 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0080092 regulation of pollen tube growth Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT4G23650
ath:AT5G12180
ath:AT5G19360
dosa:Os05g0585500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.598
Rank 1 · TkA02G399920 · TK1151
Cytoplasm0.369
Rank 2 · TkA02G399920 · TK1151
Nucleus0.185
Rank 3 · TkA02G399920 · TK1151
Golgi apparatus0.093
Rank 4 · TkA02G399920 · TK1151
Endoplasmic reticulum0.067
Rank 5 · TkA02G399920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase80-338 aa
PF07714PK_Tyr_Ser-Thr81-333 aa
PF14531Kinase-like84-137 aa
PF01636APH117-186 aa
PF06293Kdo155-219 aa
PF03109ABC1155-234 aa
PF14531Kinase-like175-291 aa
PF01636APH198-216 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G399920PF00069Pkinase803383.8e-77260.0
TkA02G399920PF07714PK_Tyr_Ser-Thr813333.6e-2899.3
TkA02G399920PF14531Kinase-like841371.7e-0525.0
TkA02G399920PF01636APH1171860.04314.3
TkA02G399920PF06293Kdo1552191.8e-0525.0
TkA02G399920PF03109ABC11552340.00616.5
TkA02G399920PF14531Kinase-like1752911.7e-0525.0
TkA02G399920PF01636APH1982160.04314.3
TkA02G399920PF17959EF-hand_142342550.02915.4
TkA02G399920PF06293Kdo3583841.8e-0525.0
TkA02G399920PF20742DUF5580_M3684440.0116.6
TkA02G399920PF12763EH3784456.2e-0936.4
TkA02G399920PF25825SAPC2_N3794452e-0731.5
TkA02G399920PF24082SPEF2_C3794050.007316.8
TkA02G399920PF21008AIF-13824452.9e-1041.3
TkA02G399920PF25578EF-hand_STIM13854070.0001622.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FMP5Arabidopsis thalianasp|Q9FMP5|CDPKH_ARATH Calcium-dependent protein kinase 1775.200%Swiss-ProtHigh
Q3E9C0Arabidopsis thalianasp|Q3E9C0|CDPKY_ARATH Calcium-dependent protein kinase 3475.000%Swiss-ProtHigh
Q5VQQ5Oryza sativa subsp. japonicasp|Q5VQQ5|CDPK2_ORYSJ Calcium-dependent protein kinase 283.100%Swiss-ProtHigh
B9FKW9Oryza sativa subsp. japonicasp|B9FKW9|CDPKE_ORYSJ Calcium-dependent protein kinase 1481.400%Swiss-ProtHigh
Q2RAV0Oryza sativa subsp. japonicasp|Q2RAV0|CDPKP_ORYSJ Calcium-dependent protein kinase 2578.400%Swiss-ProtHigh

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