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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G385940
Reference: TK1151 Chr: Chr02 Coordinates: 98096392-98099219 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1719 bp · TkA02G385940|TK1151|cDNA

TTTTGATATTATCTTACTATAAGTACATGATTTATGCATATTGTTCCCCAAATTTGAGTTCGCCCATCGCGGTCGAACAGGTGATTAAGCGAGCCCTAATGCATTTCACATAAACCCTAACCTTAGTTCATACGCATCCAAATAATCAAATCGTGTTCAAAGCAACCGGAGAATGGCGGAGCACTTGGCGTCAATTTTCGGTACAGAAAAGGACAGAGTGAATTGTCCGTTCTACTTCAAGATCGGAGCTTGTCGGCATG...

CDS

Download CDS FASTA

747 bp · TkA02G385940|TK1151|CDS

ATGGCGGAGCACTTGGCGTCAATTTTCGGTACAGAAAAGGACAGAGTGAATTGTCCGTTCTACTTCAAGATCGGAGCTTGTCGGCATGGCGACAGATGCTCGAGGCTTCACACCAAACCCAGCATCAGCCCCACTCTATTGCTTTCGAATATGTACCAACGCCCTGATTCCATCACTCCAGGTGTTGATCCTCAGGGTCAGCCCCTTGATCCTCGCAAAATCCAAGACCACTTTGAGGATTTTTATGAAGATTTGTTTGA...

Protein

Download Protein FASTA

248 aa · TkA02G385940|TK1151|PROTEIN

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDSITPGVDPQGQPLDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAAKALQNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKIGRELRRQLFGRSRRRRSRSRSHSPHRHPGGGRSSGRRGDYPDPRHHDQEPPPPQPESWREKEPPQSGEGRQC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G385940
TK1151 IDTkA02G385940
OH-1004 IDLXL04_014894
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 89.919 / OH-1004 75.338
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G385940
LocationChr02:98096392-98099219 (-)
DescriptionSimilar to U2AF35A: Splicing factor U2af small subunit A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g42820 Necessary for the splicing of pre-mRNA (By similarity). No verified direct reference in this release
At1g27650 Necessary for the splicing of pre-mRNA (By similarity). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0491756 Necessary for the splicing of pre-mRNA. No verified direct reference in this release
Os05g0564200 Necessary for the splicing of pre-mRNA. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014894 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0048573 photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0089701 U2AF complex Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0030628 pre-mRNA 3'-splice site binding Molecular Function
KEGG gene cross-reference
ath:AT1G27650
ath:AT5G42820
dosa:Os05g0564200
dosa:Os09g0491756
rno:361542
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.716
Rank 1 · TkA02G385940 · TK1151
Cytoplasm0.436
Rank 2 · TkA02G385940 · TK1151
Cell membrane0.045
Rank 3 · TkA02G385940 · TK1151
Mitochondrion0.032
Rank 4 · TkA02G385940 · TK1151
Endoplasmic reticulum0.029
Rank 5 · TkA02G385940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25585zf-CCCH_DUS3L13-34 aa
PF00642zf-CCCH14-37 aa
PF16131Torus14-42 aa
PF18345zf_CCCH_418-33 aa
PF18044zf-CCCH_418-33 aa
PF29326RRM_MUD2_C78-150 aa
PF00076RRM_183-139 aa
PF28976RRM_ACIN185-133 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G385940PF25585zf-CCCH_DUS3L13340.0315.0
TkA02G385940PF00642zf-CCCH14371.2e-1248.2
TkA02G385940PF16131Torus14420.0009520.4
TkA02G385940PF18345zf_CCCH_418330.0004121.0
TkA02G385940PF18044zf-CCCH_418330.3911.3
TkA02G385940PF29326RRM_MUD2_C781502.7e-0834.5
TkA02G385940PF00076RRM_1831395.9e-0833.2
TkA02G385940PF28976RRM_ACIN1851330.2512.2
TkA02G385940PF25015RBD_AKAP-17A1031320.1512.1
TkA02G385940PF00642zf-CCCH1501731.2e-1248.2
TkA02G385940PF16131Torus1511720.0009520.4
TkA02G385940PF18044zf-CCCH_41531720.3911.3
TkA02G385940PF18345zf_CCCH_41541720.0004121.0
TkA02G385940PF25585zf-CCCH_DUS3L1541720.0315.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FMY5Arabidopsis thalianasp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B84.700%Swiss-ProtHigh
Q9S709Arabidopsis thalianasp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A86.800%Swiss-ProtHigh
Q9ZQW8Oryza sativa subsp. japonicasp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A79.800%Swiss-ProtHigh
Q6AUG0Oryza sativa subsp. japonicasp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B81.200%Swiss-ProtHigh

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