RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G373300
Reference: TK1151 Chr: Chr02 Coordinates: 95017786-95023519 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3936 bp · TkA02G373300|TK1151|cDNA

AAAAAACCATTTAAACCAAAACTAATAGATATTCGGCCAAAATGAAATTATCTCATTATGTCTTGGAATTTGGCAGCGGCCAGCGAGGGCGTTCGCTGATTTACAAAGATGGATGAACAGATTTAAATTACAAGAGAAACCCTCGCAAACGCAAGAATGGCGGATGAATCACCACCACCAGGAGAGGAATCTCTCCAACCAGCAACACCATTGTTCCCGGTTTTGCCCACAACAGCCTCCGAACCAATAAACCCTCTACA...

CDS

Download CDS FASTA

3471 bp · TkA02G373300|TK1151|CDS

ATGGCGGATGAATCACCACCACCAGGAGAGGAATCTCTCCAACCAGCAACACCATTGTTCCCGGTTTTGCCCACAACAGCCTCCGAACCAATAAACCCTCTACAACTCTCTAATTCCAATGCACCAGGCTGGCTCAGCAACACCAGCTTCACAGCCGACATCTCAATCATCAATGACGTCGTATCCAGTCGCCACCATCACTACAGCGAACTCGATGAAGAGGAAGAAGAGAAAACAGCAGCAGAAACAGAAGAAAGGCG...

Protein

Download Protein FASTA

1156 aa · TkA02G373300|TK1151|PROTEIN

MADESPPPGEESLQPATPLFPVLPTTASEPINPLQLSNSNAPGWLSNTSFTADISIINDVVSSRHHHYSELDEEEEEKTAAETEERRPQARYELVDSSASDQDIDRNSRSSNKEQKRKRRRTKKGAANSGYDYGPSSRKQNIKSWAKETTSSSATKEYYFDSRGDRDNLAFGCLYRMDVARYKLFHGSKSSGFNSNFHSSNTRSWGFDGDNDVNSLDTKLRSEGRYWSAKYAALEHHKNFKRLRIIAPKDSTPETTTDFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G373300
TK1151 IDTkA02G373300
OH-1004 IDLXL04_015029
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G373300
LocationChr02:95017786-95023519 (+)
DescriptionSimilar to NRDE2: Nuclear exosome regulator NRDE2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015029 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000278 mitotic cell cycle Biological Process
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006974 DNA damage response Biological Process
GO:0008380 RNA splicing Biological Process
GO:0031048 regulatory ncRNA-mediated heterochromatin formation Biological Process
GO:0046833 positive regulation of RNA export from nucleus Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0051301 cell division Biological Process
GO:0071030 nuclear mRNA surveillance of spliceosomal pre-mRNA splicing Biological Process
GO:1902369 negative regulation of RNA catabolic process Biological Process
GO:1902795 siRNA-mediated facultative heterochromatin formation Biological Process
KEGG gene cross-reference
ddi:DDB_G0283719
hsa:55051
mmu:217827
spo:2540691
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.949
Rank 1 · TkA02G373300 · TK1151
Cytoplasm0.114
Rank 2 · TkA02G373300 · TK1151
Cell membrane0.021
Rank 3 · TkA02G373300 · TK1151
Mitochondrion0.018
Rank 4 · TkA02G373300 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA02G373300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04847Calcipressin5-119 aa
PF04847Calcipressin230-257 aa
PF23240HAT_PRP39_N282-343 aa
PF08424NRDE-2288-675 aa
PF23233HAT_Syf1_CNRKL1_N298-417 aa
PF05843Suf301-415 aa
PF23231HAT_Syf1_CNRKL1_C301-346 aa
PF31234TPR_Psidin_N327-362 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G373300PF04847Calcipressin51191.39.5
TkA02G373300PF04847Calcipressin2302571.39.5
TkA02G373300PF23240HAT_PRP39_N2823430.0002421.9
TkA02G373300PF08424NRDE-22886752.1e-80271.0
TkA02G373300PF23233HAT_Syf1_CNRKL1_N2984171.1e-0526.0
TkA02G373300PF05843Suf3014150.0002220.6
TkA02G373300PF23231HAT_Syf1_CNRKL1_C3013460.02414.1
TkA02G373300PF31234TPR_Psidin_N3273620.1412.4
TkA02G373300PF13428TPR_143323550.06114.8
TkA02G373300PF14559TPR_193343640.1313.3
TkA02G373300PF23240HAT_PRP39_N3384140.0002421.9
TkA02G373300PF13428TPR_143493890.06114.8
TkA02G373300PF23231HAT_Syf1_CNRKL1_C3714180.02414.1
TkA02G373300PF13428TPR_144054210.06114.8
TkA02G373300PF31234TPR_Psidin_N4454730.1412.4
TkA02G373300PF13428TPR_144524710.06114.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser