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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G360510
Reference: TK1151 Chr: Chr02 Coordinates: 91640197-91640697 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

501 bp · TkA02G360510|TK1151|cDNA

ATGTCCCTAGTTAAATCCAAGGGTGCACTTCAAAAGTTTGCATTACTACCTCACAACACAACCCTTACCGTGCGCTTTGGTGCGTACGATACAGTTGGCCTTTTTCAAAAGATGATGATTTCCTTATTTCTCGCCCTGTTTCTACCCTGCGCCGGGATGAGTGCGGTGTTCCTTGTGTACATGTGTTTGCTATGGTACGCCGCACATCACCTCCCTGTAATGACGGCTCCGGAGAAACCCACCACCGATACTGGCCTTTC...

CDS

Download CDS FASTA

501 bp · TkA02G360510|TK1151|CDS

ATGTCCCTAGTTAAATCCAAGGGTGCACTTCAAAAGTTTGCATTACTACCTCACAACACAACCCTTACCGTGCGCTTTGGTGCGTACGATACAGTTGGCCTTTTTCAAAAGATGATGATTTCCTTATTTCTCGCCCTGTTTCTACCCTGCGCCGGGATGAGTGCGGTGTTCCTTGTGTACATGTGTTTGCTATGGTACGCCGCACATCACCTCCCTGTAATGACGGCTCCGGAGAAACCCACCACCGATACTGGCCTTTC...

Protein

Download Protein FASTA

166 aa · TkA02G360510|TK1151|PROTEIN

MSLVKSKGALQKFALLPHNTTLTVRFGAYDTVGLFQKMMISLFLALFLPCAGMSAVFLVYMCLLWYAAHHLPVMTAPEKPTTDTGLSAAELDKLPRTTGKELGVGTECSVCLEDIEAEQPARVVPGCNHGFHLQCADTWLSKNPACPVCRNKLEPDFFRTSETCPC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G360510
TK1151 IDTkA02G360510
OH-1004 IDLXL04_015146
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 68.675 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G360510
LocationChr02:91640197-91640697 (-)
DescriptionSimilar to ATL23: E3 ubiquitin-protein ligase ATL23
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g42200 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro. No verified direct reference in this release
At3g18773 RING-H2 finger protein ATL77. No verified direct reference in this release
At1g72310 RING-H2 finger protein ATL3. No verified direct reference in this release
At3g10910 RING-H2 finger protein ATL72. No verified direct reference in this release
At5g01880 RING-H2 finger protein ATL74. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015146 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006513 protein monoubiquitination Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048481 plant ovule development Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005634 nucleus Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT2G17450
ath:AT3G10910
ath:AT3G18773
ath:AT5G42200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.275
Rank 1 · TkA02G360510 · TK1151
Cell membrane0.260
Rank 2 · TkA02G360510 · TK1151
Golgi apparatus0.255
Rank 3 · TkA02G360510 · TK1151
Lysosome / Vacuole0.213
Rank 4 · TkA02G360510 · TK1151
Cytoplasm0.211
Rank 5 · TkA02G360510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13920zf-C3HC4_346-51 aa
PF17123zf-RING_1147-50 aa
PF14446Prok-RING_1104-136 aa
PF29452FAR1_N105-155 aa
PF13920zf-C3HC4_3106-153 aa
PF13639zf-RING_2107-150 aa
PF17123zf-RING_11107-135 aa
PF13923zf-C3HC4_2107-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G360510PF13920zf-C3HC4_346515e-0523.7
TkA02G360510PF17123zf-RING_1147502e-1040.9
TkA02G360510PF14446Prok-RING_11041360.01116.5
TkA02G360510PF29452FAR1_N1051550.1512.8
TkA02G360510PF13920zf-C3HC4_31061535e-0523.7
TkA02G360510PF13639zf-RING_21071507e-1452.5
TkA02G360510PF17123zf-RING_111071352e-1040.9
TkA02G360510PF13923zf-C3HC4_21071491.2e-0732.1
TkA02G360510PF14634zf-RING_51071502.8e-0524.7
TkA02G360510PF17120zf-RING_161071480.0116.1
TkA02G360510PF21202SLX1_C1071520.1313.4
TkA02G360510PF12678zf-rbx11081504.5e-0833.9
TkA02G360510PF00097zf-C3HC41081493.2e-0627.6
TkA02G360510PF13445zf-RING_UBOX1081472.9e-0524.7
TkA02G360510PF14447Prok-RING_41081550.006617.0
TkA02G360510PF24921RING_XB3-XBAT311081530.03115.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L9W3Arabidopsis thalianasp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL2351.500%Swiss-ProtHigh
Q9LS99Arabidopsis thalianasp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL7739.100%Swiss-ProtMedium
Q9XF63Arabidopsis thalianasp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL339.200%Swiss-ProtLow
Q9SG96Arabidopsis thalianasp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL7254.200%Swiss-ProtLow
Q9LZV8Arabidopsis thalianasp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL7441.700%Swiss-ProtLow

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