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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G359780
Reference: TK1151 Chr: Chr02 Coordinates: 91446852-91448894 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1947 bp · TkA02G359780|TK1151|cDNA

ATGCCCGAATGGAAAAAAGATGTGTTCGGGAAAGCGTTGACTTTCGGTCAACGCTCAAAACTCTCCCTCCAAGAACAACGACAAAGCCTCCCAATCTACAAACTCAAAAAAGAACTCGTCCAAGCCGTCCACGACAACCAGGTGTTAGTAGTCATCGGGGAAACCGGGTCCGGGAAAACAACTCAGGTGACTCAATACCTAGCGGAAGCCGGGTACACCACCAAGGGCAAAATCGGGTGCATGCAACCCCGCCGAGTCGC...

CDS

Download CDS FASTA

1947 bp · TkA02G359780|TK1151|CDS

ATGCCCGAATGGAAAAAAGATGTGTTCGGGAAAGCGTTGACTTTCGGTCAACGCTCAAAACTCTCCCTCCAAGAACAACGACAAAGCCTCCCAATCTACAAACTCAAAAAAGAACTCGTCCAAGCCGTCCACGACAACCAGGTGTTAGTAGTCATCGGGGAAACCGGGTCCGGGAAAACAACTCAGGTGACTCAATACCTAGCGGAAGCCGGGTACACCACCAAGGGCAAAATCGGGTGCATGCAACCCCGCCGAGTCGC...

Protein

Download Protein FASTA

648 aa · TkA02G359780|TK1151|PROTEIN

MPEWKKDVFGKALTFGQRSKLSLQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCMQPRRVAAMSVAKRVAEEFGCRLDEEVGYAIRFEDYTGPETVIKYMTDGMLLREILIDENLSQYSVIMIDEAHERTIHTNVLFGLLKQLIRRRPDLRLIVTSATLDAEKFSRYFFSCNIFTIPGRTFPVEILYTKQPESDYLDAALITVMQIHLTEPEGDILVFLTGQEEIDHACQCLYE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G359780
TK1151 IDTkA02G359780
OH-1004 IDLXL04_015155
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)95.300
Protein coverage (%)TK1151 100.000 / OH-1004 51.205
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G359780
LocationChr02:91446852-91448894 (-)
DescriptionSimilar to At3g26560: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g26560 May be involved in pre-mRNA splicing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015155 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006396 RNA processing Biological Process
GO:0007281 germ cell development Biological Process
GO:0008380 RNA splicing Biological Process
GO:0010172 embryonic body morphogenesis Biological Process
GO:0048589 developmental growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT3G26560
cel:CELE_EEED8.5
ddi:DDB_G0291183
hsa:1659
mmu:217207
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.506
Rank 1 · TkA02G359780 · TK1151
Nucleus0.332
Rank 2 · TkA02G359780 · TK1151
Mitochondrion0.120
Rank 3 · TkA02G359780 · TK1151
Plastid0.063
Rank 4 · TkA02G359780 · TK1151
Peroxisome0.059
Rank 5 · TkA02G359780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14532Sigma54_activ_229-71 aa
PF00931NB-ARC32-69 aa
PF02367TsaE34-73 aa
PF02562PhoH36-61 aa
PF00270DEAD37-188 aa
PF20720nSTAND337-66 aa
PF00437T2SSE37-68 aa
PF13245AAA_1938-170 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G359780PF14532Sigma54_activ_229710.01216.7
TkA02G359780PF00931NB-ARC32690.1912.0
TkA02G359780PF02367TsaE34730.0215.5
TkA02G359780PF02562PhoH36610.05813.6
TkA02G359780PF00270DEAD371884.4e-0937.0
TkA02G359780PF20720nSTAND337660.007916.6
TkA02G359780PF00437T2SSE37680.06712.6
TkA02G359780PF13245AAA_19381702.2e-0525.4
TkA02G359780PF13191AAA_1638770.01616.5
TkA02G359780PF13604AAA_30391520.00119.6
TkA02G359780PF00580UvrD-helicase401590.1312.6
TkA02G359780PF25199nSTAND_NTPase542710.05314.1
TkA02G359780PF00005ABC_tran43780.06514.6
TkA02G359780PF24883NPHP3_N43640.3111.9
TkA02G359780PF06745ATPase44690.211.7
TkA02G359780PF13401AAA_22451691.8e-0732.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38953Arabidopsis thalianasp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH588.600%Swiss-ProtHigh

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