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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G358820
Reference: TK1151 Chr: Chr02 Coordinates: 91148408-91151623 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2787 bp · TkA02G358820|TK1151|cDNA

AAAATGTATAAAAAAACCCTCCATTGTAGATAACAGGGTGATTATAAGAACACGTAGATGCAATCCAATCCAACACTCAAAAACATATGGCTTTGGTTGATGCATGAAACCTCCATTTCCTTCACATAAAAATCAAACCCATTTCCCTCAAATTCAATCGCTTTTCACACGATTTGCCAATATATACACTTGATTGATCGATTTCAAGAAACCTCGACCAAAAAAAAGCTCAATTCATCAATGGCTTCCGCCACAAATAC...

CDS

Download CDS FASTA

2124 bp · TkA02G358820|TK1151|CDS

ATGGCTTCCGCCACAAATACCGTTCTTTCTTCCAATTTCCTTGGTTCAACTGTCTTGCTCTCAACCCCAACGCCCAAAACCCATAAATCGTTAAGGAATAGATTTGTAATCCCACAATCAGTTCTTAGCAAAAAACCCAATTCTTCAAAAGATTTCAATTTTCAATCGAAAGCCACTTTAGCTGCTCTACTATTCTCTTCAATCACAGCACCACAAGCCCTAGCGGACACCAATTCACCACCACCACCACCACAAACCCC...

Protein

Download Protein FASTA

707 aa · TkA02G358820|TK1151|PROTEIN

MASATNTVLSSNFLGSTVLLSTPTPKTHKSLRNRFVIPQSVLSKKPNSSKDFNFQSKATLAALLFSSITAPQALADTNSPPPPPQTPLQAELVKQNPSTNSLPFSQSNVLTAPKPQANSDLPEGSQWRYSEFLNAVKKGKVERVRFNKDGGVLQLTAVDGRRASVVVPNDPDLIDILAMNGVDISVSEGEASNGLLGFIGNLLFPILAFGGLFFLFRRSQGGGGGPGGLGGPMDFGRSKSKFQEVPETGVSFADVAGADQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G358820
TK1151 IDTkA02G358820
OH-1004 IDLXL04_015176
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G358820
LocationChr02:91148408-91151623 (+)
DescriptionSimilar to FTSH: ATP-dependent zinc metalloprotease FTSH, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g50250 Part of a complex that function as an ATP-dependent zinc metallopeptidase. No verified direct reference in this release
At5g42270 Part of a complex that function as an ATP-dependent zinc metallopeptidase.
The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in the mutant alleles.2002 · DOI: 10.1046/j.1365-2443.2002.00558.x
Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes.2003 · DOI: 10.1105/tpc.017319

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0725900 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015176 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0010205 photoinhibition Biological Process
GO:0010206 photosystem II repair Biological Process
GO:0010304 PSII associated light-harvesting complex II catabolic process Biological Process
GO:0019684 photosynthesis, light reaction Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0048564 photosystem I assembly Biological Process
GO:0051301 cell division Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
KEGG gene cross-reference
ath:AT1G50250
ath:AT5G42270
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.966
Rank 1 · TkA02G358820 · TK1151
Mitochondrion0.048
Rank 2 · TkA02G358820 · TK1151
Nucleus0.019
Rank 3 · TkA02G358820 · TK1151
Cytoplasm0.018
Rank 4 · TkA02G358820 · TK1151
Cell membrane0.011
Rank 5 · TkA02G358820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05729NACHT52-77 aa
PF06480FtsH_ext124-187 aa
PF06480FtsH_ext203-220 aa
PF13191AAA_16286-340 aa
PF12775AAA_7286-306 aa
PF06068TIP49287-323 aa
PF00004AAA289-421 aa
PF07728AAA_5289-409 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G358820PF05729NACHT52770.2511.9
TkA02G358820PF06480FtsH_ext1241877.9e-0626.7
TkA02G358820PF06480FtsH_ext2032207.9e-0626.7
TkA02G358820PF13191AAA_162863400.0001722.9
TkA02G358820PF12775AAA_72863060.2711.5
TkA02G358820PF06068TIP492873230.001918.2
TkA02G358820PF00004AAA2894219.9e-46156.1
TkA02G358820PF07728AAA_52894097.2e-0523.5
TkA02G358820PF13401AAA_222893150.002818.7
TkA02G358820PF20720nSTAND32894170.002818.0
TkA02G358820PF05496RuvB_N2893190.009316.5
TkA02G358820PF13173AAA_142893570.02515.3
TkA02G358820PF01078Mg_chelatase2893070.07213.2
TkA02G358820PF05729NACHT2893080.2511.9
TkA02G358820PF07724AAA_22903580.004417.8
TkA02G358820PF13521AAA_282903240.00917.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q39102Arabidopsis thalianasp|Q39102|FTSH1_ARATH ATP-dependent zinc metalloprotease FTSH 1, chloroplastic83.900%Swiss-ProtHigh
Q9FH02Arabidopsis thalianasp|Q9FH02|FTSH5_ARATH ATP-dependent zinc metalloprotease FTSH 5, chloroplastic84.200%Swiss-ProtHigh
Q5Z974Oryza sativa subsp. japonicasp|Q5Z974|FTSH1_ORYSJ ATP-dependent zinc metalloprotease FTSH 1, chloroplastic87.000%Swiss-ProtHigh

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