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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G352760
Reference: TK1151 Chr: Chr02 Coordinates: 89682479-89699177 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5745 bp · TkA02G352760|TK1151|cDNA

GTAGGGAAGTGACTCTGTGCTTTAATAAAGCAGATGGTGGACTTGATGACCCCCATTATTTGTCCTACACTTTGTAGTACATTACGTTGTGCATTTAGTACCTAAAGACTAAGCGTTAACAATAATTGAGGATGGTTCATATATATTGGTCTTCTTCATCACAAATCACAATTCGAACCACCTCTTCACATTCACTATTTACAAAGCAGCAGAAGCAGCAAGCATAAGCACAGCAGCATATAGTAGAGCAATGTCTCAGT...

CDS

Download CDS FASTA

5286 bp · TkA02G352760|TK1151|CDS

ATGGAGGTTGTATCTGCTATCATTGGTTCTATTGTTGAATCTTTATTGGTTCCAGTGAAGAAACAGCTAGGATATCTATTTTCCTCAACAAAACATGTTGGGAAGATGAATGCTAGAATGAAGCAATTGCACGATACAAGCATTGATGTCGCGAAACACATGGAAGAAAACAATATAAGCAATCAGGAGATACCTACTCATGTGCCTGGTTGGTTGAAAGAGGTCGCAAAGATTGAGGAAGATGCCGAAAGAATTTCAAG...

Protein

Download Protein FASTA

1761 aa · TkA02G352760|TK1151|PROTEIN

MEVVSAIIGSIVESLLVPVKKQLGYLFSSTKHVGKMNARMKQLHDTSIDVAKHMEENNISNQEIPTHVPGWLKEVAKIEEDAERISSIENGCFNLKMRYCRGRTACKTTEVIEKLIKENSETSWRDVQRPLGKVKSHITSTSAVSNDYGDAQNHFKSREQSFKDALESLQQDQKIKVIALCGMGGVGKTTMMEQLKKTAQDKKMFDYVVKVVIGQQINMSKIQQDVAEYIIGKSLSELSQEVRADRLRIAFENLPEGKNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G352760
TK1151 IDTkA02G352760
OH-1004 IDLXL04_015246
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)86.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G352760
LocationChr02:89682479-89699177 (-)
DescriptionSimilar to At4g27190: Disease resistance protein At4g27190
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g43740 Probable disease resistance protein. No verified direct reference in this release
At5g43730 Probable disease resistance protein. No verified direct reference in this release
At1g12210 Disease resistance (R) protein. No verified direct reference in this release
At1g12280 Disease resistance protein that mediates defense responses against the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000, and the virulent oomycete Hyaloperonospora arabidopsidis isolate Noco2.
The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.2012 · DOI: 10.1105/tpc.112.097253
At1g12220 Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015246 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009617 response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT1G12210
ath:AT4G27190
ath:AT4G27220
ath:AT5G43740
ath:AT5G47250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.513
Rank 1 · TkA02G352760 · TK1151
Cytoplasm0.311
Rank 2 · TkA02G352760 · TK1151
Nucleus0.229
Rank 3 · TkA02G352760 · TK1151
Endoplasmic reticulum0.086
Rank 4 · TkA02G352760 · TK1151
Extracellular0.045
Rank 5 · TkA02G352760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00549Ligase_CoA143-225 aa
PF03193RsgA_GTPase147-200 aa
PF25199nSTAND_NTPase5148-199 aa
PF25019LRR_R13L1-DRL21155-193 aa
PF01637ATPase_2157-275 aa
PF25201nSTAND6158-228 aa
PF00931NB-ARC159-334 aa
PF12847Methyltransf_18159-204 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G352760PF00549Ligase_CoA1432250.003218.4
TkA02G352760PF03193RsgA_GTPase1472000.002318.5
TkA02G352760PF25199nSTAND_NTPase51481990.08613.4
TkA02G352760PF25019LRR_R13L1-DRL211551932.4e-1144.3
TkA02G352760PF01637ATPase_21572750.0005720.5
TkA02G352760PF25201nSTAND61582280.001719.1
TkA02G352760PF00931NB-ARC1593341.7e-2487.0
TkA02G352760PF12847Methyltransf_181592040.02515.3
TkA02G352760PF20720nSTAND31602040.004317.5
TkA02G352760PF13191AAA_161622090.02915.6
TkA02G352760PF04816TrmK1632010.0813.2
TkA02G352760PF01018GTP1_OBG1632000.1812.1
TkA02G352760PF13401AAA_221762680.009317.0
TkA02G352760PF13173AAA_141762070.06314.0
TkA02G352760PF13604AAA_301762030.1912.2
TkA02G352760PF05729NACHT1772710.0001422.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FG90Arabidopsis thalianasp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g4374025.900%Swiss-ProtLow
Q9FG91Arabidopsis thalianasp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g4373027.700%Swiss-ProtLow
Q8L3R3Arabidopsis thalianasp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL125.200%Swiss-ProtLow
P60838Arabidopsis thalianasp|P60838|SUMM2_ARATH Disease resistance protein SUMM225.900%Swiss-ProtLow
O64973Arabidopsis thalianasp|O64973|RPS5_ARATH Disease resistance protein RPS526.400%Swiss-ProtLow

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