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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G348840
Reference: TK1151 Chr: Chr02 Coordinates: 88672121-88690525 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5179 bp · TkA02G348840|TK1151|cDNA

TAAAGCAATTAAAAACCACACCTACAAATTTTGCAATTAACTCTTGTCGTACATATCCCATTATTCAAATCTTGACTACAGCTGTCCTGTTCGATTTCCTGTTTGGAAATTTTGTACAATAATTCTCTCTTTTGAGTCTATAGCCACCCATCTTTCTCATCTTATCTCTCAGAACAGGAAATTTTGTACAATAATTTTCTCTTTTGAGTCTATGGCCACCCATCTTTCTCATCTTATCTCTCAGTTCTTCGTCTCCAAGA...

CDS

Download CDS FASTA

5886 bp · TkA02G348840|TK1151|CDS

ATGGAGGTTGCTAATGAAATAGCGAAAGGAGTTGTTCAGGTTCTCATGGTTCCGGTTAAAAAACAATTGGATTACGTAATTTCCCACAAAAAATATCTGGAGGATATGCACAAAAAAATGAAGGATTTGGATGCTAAAAAAGTCGGCGTTGAATCCCAAAAGAAGCAAAACAGAGAAAGACGTCTTGAGGTTCCTGCCGAAGTCAGCCCTTGGTTGGAAGAAGTAGAACATATGAATGCAAAGGTGGCAGATTTTCCAAG...

Protein

Download Protein FASTA

1961 aa · TkA02G348840|TK1151|PROTEIN

MEVANEIAKGVVQVLMVPVKKQLDYVISHKKYLEDMHKKMKDLDAKKVGVESQKKQNRERRLEVPAEVSPWLEEVEHMNAKVADFPSEVTGCLDLKSRHKLGSKASKIIKEIDSVLGRCPEIRGTELQIPLGRIDSTIGSTSTLSSDRSDFRSREHTFTKALEALGPNHSSHMVALWGMGGVGKTTMMKKLKEVVVEKKMFNHYVEVVIGEKTDPIAIQRAVAEYLGIDLTQTSKSARTDKLRTWFVNNSDGGKKKFLVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G348840
TK1151 IDTkA02G348840
OH-1004 IDLXL04_015282
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)81.000
Protein coverage (%)TK1151 99.592 / OH-1004 99.600
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G348840
LocationChr02:88672121-88690525 (+)
DescriptionSimilar to At4g27220: Probable disease resistance protein At4g27220
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27220 Probable disease resistance protein. No verified direct reference in this release
At4g27190 Disease resistance protein. No verified direct reference in this release
At1g15890 Probable disease resistance protein. No verified direct reference in this release
At4g26090 Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. No verified direct reference in this release
At1g12280 Disease resistance protein that mediates defense responses against the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000, and the virulent oomycete Hyaloperonospora arabidopsidis isolate Noco2.
The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.2012 · DOI: 10.1105/tpc.112.097253

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015282 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT1G61180
ath:AT4G10780
ath:AT4G26090
ath:AT4G27190
ath:AT4G27220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.488
Rank 1 · TkA02G348840 · TK1151
Cytoplasm0.324
Rank 2 · TkA02G348840 · TK1151
Nucleus0.246
Rank 3 · TkA02G348840 · TK1151
Endoplasmic reticulum0.091
Rank 4 · TkA02G348840 · TK1151
Extracellular0.046
Rank 5 · TkA02G348840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25019LRR_R13L1-DRL21147-188 aa
PF13191AAA_16153-210 aa
PF00931NB-ARC155-323 aa
PF25201nSTAND6155-228 aa
PF20720nSTAND3158-199 aa
PF03193RsgA_GTPase160-193 aa
PF01637ATPase_2162-269 aa
PF13604AAA_30171-227 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G348840PF25019LRR_R13L1-DRL211471885.2e-0523.9
TkA02G348840PF13191AAA_161532100.02116.1
TkA02G348840PF00931NB-ARC1553231.6e-2487.1
TkA02G348840PF25201nSTAND61552280.0215.7
TkA02G348840PF20720nSTAND31581992.58.5
TkA02G348840PF03193RsgA_GTPase1601930.1612.5
TkA02G348840PF01637ATPase_21622690.1212.8
TkA02G348840PF13604AAA_301712270.06813.6
TkA02G348840PF13401AAA_221722630.001719.4
TkA02G348840PF23952LRR_EndoS5166280.0001223.0
TkA02G348840PF12799LRR_45225370.000421.3
TkA02G348840PF23598LRR_145255562.1e-1350.5
TkA02G348840PF13855LRR_85285840.8210.2
TkA02G348840PF23247LRR_RPS25526074.2e-125414.3
TkA02G348840PF25019LRR_R13L1-DRL215526075.2e-0523.9
TkA02G348840PF23598LRR_145626502.1e-1350.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81825Arabidopsis thalianasp|O81825|DRL28_ARATH Probable disease resistance protein At4g2722030.000%Swiss-ProtLow
Q9T048Arabidopsis thalianasp|Q9T048|DRL27_ARATH Disease resistance protein At4g2719030.900%Swiss-ProtLow
Q9LMP6Arabidopsis thalianasp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g1589025.700%Swiss-ProtLow
Q42484Arabidopsis thalianasp|Q42484|RPS2_ARATH Disease resistance protein RPS227.000%Swiss-ProtLow
P60838Arabidopsis thalianasp|P60838|SUMM2_ARATH Disease resistance protein SUMM228.000%Swiss-ProtLow

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