TkA02G323590 | RubberDandelionOmics

Gene overview

TkA02G323590

Reference: TK1151 Chr: Chr02 Coordinates: 82133068-82133895 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

651 bp · TkA02G323590|TK1151|cDNA

GTATTTCTTCTTCATCGTAATCAACCGGTTTTCGATCGAACTGCATCCATGATGCAAGTAAAGAATCACAACCTATTATTAGCCCAAAGGTGAAGAAATCCTGGCTACAACGGTACAATCTATTTTCAAGGTACGACGAAGGTATCAAAATGGACGAAGAAGGATGGTTCTCCGTCACGCCGGAGGAAATCGCAGTCCGCCACGCCCAGCGGAGCATTGCCGGTGGAGTCGTAATCGATTGCTTTGCTGGTATGGGTGGC...

CDS

Download CDS FASTA

474 bp · TkA02G323590|TK1151|CDS

ATGGACGAAGAAGGATGGTTCTCCGTCACGCCGGAGGAAATCGCAGTCCGCCACGCCCAGCGGAGCATTGCCGGTGGAGTCGTAATCGATTGCTTTGCTGGTATGGGTGGCAATTCCATTCAATTTGCTGCACTGGGGTATCACGTTATTGCCATTGATATCGATCCTCTAAAAGTTGAAATGGCATCAAACAATGCAAAGATCTACGGTGTGGACAATTACATTGATTTCATCGTGGGAGACTTTTTGCAACTAGCACC...

Protein

Download Protein FASTA

157 aa · TkA02G323590|TK1151|PROTEIN

MDEEGWFSVTPEEIAVRHAQRSIAGGVVIDCFAGMGGNSIQFAALGYHVIAIDIDPLKVEMASNNAKIYGVDNYIDFIVGDFLQLAPSLKGNVAFLSPPWGGPSYKMTHNFTLDLLKPVDGYTLFQVAQRITPNIIMFLPRNVDVCQVEQLSWLSLP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G323590`
TK1151 ID	TkA02G323590
OH-1004 ID	LXL04_038664
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 61.811 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G323590`
Location	Chr02:82133068-82133895 (-)
Description	Similar to Tgs1: Trimethylguanosine synthase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038664` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000387 spliceosomal snRNP assembly Biological Process GO:0001510 RNA methylation Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0008033 tRNA processing Biological Process GO:0017126 nucleologenesis Biological Process GO:0022613 ribonucleoprotein complex biogenesis Biological Process GO:0032210 regulation of telomere maintenance via telomerase Biological Process GO:0036261 7-methylguanosine cap hypermethylation Biological Process GO:0042308 negative regulation of protein import into nucleus Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0071333 cellular response to glucose stimulus Biological Process GO:0071398 cellular response to fatty acid Biological Process
KEGG gene cross-reference	hsa:96764 mmu:116940 rno:312947 sce:YPL157W spo:2542015 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.698

Rank 1 · TkA02G323590 · TK1151

Nucleus0.417

Rank 2 · TkA02G323590 · TK1151

Mitochondrion0.062

Rank 3 · TkA02G323590 · TK1151

Peroxisome0.054

Rank 4 · TkA02G323590 · TK1151

Endoplasmic reticulum0.043

Rank 5 · TkA02G323590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02475TRM5-TYW2_MTfase7-92 aa

PF03848TehB8-60 aa

PF03602Cons_hypoth9520-102 aa

PF01555N6_N4_Mtase22-62 aa

PF13847Methyltransf_3125-86 aa

PF09445Methyltransf_1527-151 aa

PF06325PrmA27-76 aa

PF04445SAM_MT27-57 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G323590	`PF02475`	TRM5-TYW2_MTfase	7	92	1.1e-09	39.2
TkA02G323590	`PF03848`	TehB	8	60	0.0078	16.4
TkA02G323590	`PF03602`	Cons_hypoth95	20	102	5.9e-05	23.5
TkA02G323590	`PF01555`	N6_N4_Mtase	22	62	0.027	15.2
TkA02G323590	`PF13847`	Methyltransf_31	25	86	3.4e-06	27.6
TkA02G323590	`PF09445`	Methyltransf_15	27	151	1.3e-37	129.7
TkA02G323590	`PF06325`	PrmA	27	76	0.008	16.4
TkA02G323590	`PF04445`	SAM_MT	27	57	0.22	11.6
TkA02G323590	`PF13649`	Methyltransf_25	28	86	1.1e-05	26.7
TkA02G323590	`PF12847`	Methyltransf_18	32	40	0.16	12.7
TkA02G323590	`PF08241`	Methyltransf_11	33	87	0.0013	20.1
TkA02G323590	`PF29244`	Methyltransf_ANTKMT	33	87	0.0061	17.8
TkA02G323590	`PF03721`	UDPG_MGDP_dh_N	39	68	0.3	11.5
TkA02G323590	`PF01170`	UPF0020	47	101	0.00096	19.6
TkA02G323590	`PF13578`	Methyltransf_24	47	95	0.19	13.3
TkA02G323590	`PF01596`	Methyltransf_3	48	86	0.052	13.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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