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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G263760
Reference: TK1151 Chr: Chr02 Coordinates: 67518230-67524194 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3463 bp · TkA02G263760|TK1151|cDNA

AAATTGACCCGTTATACTATGCGGATCCGGATAAACCTTCACCTCCCAATTTGTTTCAGAACAAAGAGGTAGAAGTCGGTATCTTCACAATCCGTTAATCCGCCATGGGATTCATCTCGCACACAATGCAACTTCTCTCATGTCACCCTCTCTAAAACCCTGAATTCCCATAAACCCTAGTTCATCACACAATATGCTTCCTACACAAATTGGGATACCTGATAAATTGTATTACTGGGCCTTTTTCTTCCCAACCAGCA...

CDS

Download CDS FASTA

2280 bp · TkA02G263760|TK1151|CDS

ATGTTACCAAGAATGAGCTTTGAAGATCTCCAGAAATCTATTAATACCGATATGGTACAAAAAATTACTTTCAAGGATGAGGGCGCTTTCGGGCGTAAGGATCTCATCGTGGAGCTAAAAGAGATTCCGGGAGCCAAGAATCTACAGAGGACTAAGTGGTCGATAAAGCTTACTGGTAATCAAGTACGAACTGTTCTAAATGAGTATAACGGACCCCGATATGAAATAGAGACACAAACGATGGCATCGGTCGGAAATCT...

Protein

Download Protein FASTA

759 aa · TkA02G263760|TK1151|PROTEIN

MLPRMSFEDLQKSINTDMVQKITFKDEGAFGRKDLIVELKEIPGAKNLQRTKWSIKLTGNQVRTVLNEYNGPRYEIETQTMASVGNLPQYPNPVASSISSRVMVELGALTAAIGAAAIVISGFLASAAIAAASFVYVGTTYVIWPMAKSFLSVPLEVLFGVLEKTGEVLLDLFIYGGISSKLNEMWTLGVFSSAFNIAKPMVSVGLLMVVLLRFTLSRRPKNFRKWDIWQGIEFSQSKPQARVDGSTGVSFDDVAGIEIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G263760
TK1151 IDTkA02G263760
OH-1004 IDLXL04_029509
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 81.003
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G263760
LocationChr02:67518230-67524194 (+)
DescriptionSimilar to FTSHI1: Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g23940 Functions in chloroplast biogenesis and chloroplast division.
The distinctive roles of five different ARC genes in the chloroplast division process in Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00500.x
FtsHi1/ARC1 is an essential gene in Arabidopsis that links chloroplast biogenesis and division.2012 · DOI: 10.1111/tpj.12001
FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis.2014 · DOI: 10.1371/journal.pone.0099741

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029509 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010020 chloroplast fission Biological Process
GO:0010304 PSII associated light-harvesting complex II catabolic process Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0043572 plastid fission Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
KEGG gene cross-reference
ath:AT4G23940
sth:STH3198
tle:Tlet_1535
tma:TM0580
tmi:THEMA_01765
tmm:Tmari_0578
tmw:THMA_0595
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.464
Rank 1 · TkA02G263760 · TK1151
Plastid0.324
Rank 2 · TkA02G263760 · TK1151
Cytoplasm0.102
Rank 3 · TkA02G263760 · TK1151
Nucleus0.084
Rank 4 · TkA02G263760 · TK1151
Cell membrane0.047
Rank 5 · TkA02G263760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_16277-312 aa
PF06745ATPase279-303 aa
PF00005ABC_tran282-308 aa
PF06068TIP49286-322 aa
PF01078Mg_chelatase286-306 aa
PF20720nSTAND3286-352 aa
PF07728AAA_5287-415 aa
PF05496RuvB_N287-392 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G263760PF13191AAA_162773120.009517.2
TkA02G263760PF06745ATPase2793030.2611.3
TkA02G263760PF00005ABC_tran2823080.2412.7
TkA02G263760PF06068TIP492863220.0003820.5
TkA02G263760PF01078Mg_chelatase2863060.009816.0
TkA02G263760PF20720nSTAND32863520.02714.9
TkA02G263760PF07728AAA_52874151e-0526.3
TkA02G263760PF05496RuvB_N2873921.5e-0525.5
TkA02G263760PF01695IstB_IS212873530.09412.9
TkA02G263760PF03215Rad172873140.1512.7
TkA02G263760PF00004AAA2884283.9e-40138.1
TkA02G263760PF13521AAA_282883270.01316.5
TkA02G263760PF13238AAA_182883190.08714.0
TkA02G263760PF13173AAA_142883560.1113.2
TkA02G263760PF13401AAA_222893090.004218.1
TkA02G263760PF07724AAA_22893580.2811.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22993Arabidopsis thalianasp|O22993|FTSI1_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic72.100%Swiss-ProtHigh

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