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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G261270
Reference: TK1151 Chr: Chr02 Coordinates: 66669246-66670733 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1419 bp · TkA02G261270|TK1151|cDNA

CTGGGAACTGGTTAGTTCGGTCAATAGTTTTCTGAATGCTACAATTAATCCAAATGCTGGGTTTGCCTGTTAGGCTGTTACCTATTCGACGTAATGCTTCAAGGAATGAAGACGTCTTGTTCTGGTTCTAAAAAATGACTTTTGCTACATCAGGAATTGCTGGTTTCGGTTAATTGAAGAAAGAACAAGATGACACCCCGTTTACCAAATCCACTGAAACGTACGAAACCCAATGTAATTTCAATGCTGGTTACGAAAGT...

CDS

Download CDS FASTA

1230 bp · TkA02G261270|TK1151|CDS

ATGACACCCCGTTTACCAAATCCACTGAAACGTACGAAACCCAATGTAATTTCAATGCTGGTTACGAAAGTGACGACCTTGTTGAATCACCGTTTACGTGTCAATCAAGTGAAACAACTCCATGCTCTAGTACTTATCAATGGTCTCAGTTATCTCGAGCCTCTGGTGATCACCCAAATCATTTGCACACCATTTGGGCATTCTGAAGGTACACTCCATTATCTTCGGTCTCTTCTCCGCCACACAAAGCACCCAAATGT...

Protein

Download Protein FASTA

410 aa · TkA02G261270|TK1151|PROTEIN

MTPRLPNPLKRTKPNVISMLVTKVTTLLNHRLRVNQVKQLHALVLINGLSYLEPLVITQIICTPFGHSEGTLHYLRSLLRHTKHPNVTARASVIQFFYQRGEFREALREYVRIQRSGIFPTTSTVASALKACTRIGNCIAGIRIHGQVYGYGFCGDVHVGTALVGLYSKINDMETAKKVFDEMSDRNSASRLINGYLESGDLPMAERLFSEMGHKDIASWDSMVSWYTRTGDMEKAIASFGPMPVKTSSSWTSMIDGYID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G261270
TK1151 IDTkA02G261270
OH-1004 IDLXL04_029546
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)96.100
Protein coverage (%)TK1151 100.000 / OH-1004 84.536
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G261270
LocationChr02:66669246-66670733 (+)
DescriptionSimilar to PCMP-E6: Pentatricopeptide repeat-containing protein At4g22760
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44230 Pentatricopeptide repeat-containing protein At5g44230. No verified direct reference in this release
At3g22690 Pentatricopeptide repeat-containing protein At3g22690. No verified direct reference in this release
At5g13230 Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial. No verified direct reference in this release
At4g04370 Pentatricopeptide repeat-containing protein At4g04370. No verified direct reference in this release
At3g21470 Pentatricopeptide repeat-containing protein At3g21470. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029546 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G45350
ath:AT3G21470
ath:AT4G22760
ath:AT5G37570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.603
Rank 1 · TkA02G261270 · TK1151
Plastid0.203
Rank 2 · TkA02G261270 · TK1151
Nucleus0.054
Rank 3 · TkA02G261270 · TK1151
Cytoplasm0.039
Rank 4 · TkA02G261270 · TK1151
Cell membrane0.006
Rank 5 · TkA02G261270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_225-39 aa
PF00637Clathrin69-88 aa
PF14559TPR_1972-111 aa
PF13432TPR_1674-111 aa
PF13041PPR_285-133 aa
PF13812PPR_386-132 aa
PF23276TPR_2491-133 aa
PF24760TPR_IF140_C91-108 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G261270PF13041PPR_225391.7e-39134.4
TkA02G261270PF00637Clathrin69880.003717.7
TkA02G261270PF14559TPR_19721116.9e-0833.4
TkA02G261270PF13432TPR_16741110.3512.1
TkA02G261270PF13041PPR_2851331.7e-39134.4
TkA02G261270PF13812PPR_3861327.6e-0936.3
TkA02G261270PF23276TPR_24911334.1e-1143.6
TkA02G261270PF24760TPR_IF140_C911080.001419.7
TkA02G261270PF12921ATP13911140.03514.7
TkA02G261270PF01535PPR921162.5e-37125.2
TkA02G261270PF29070MSC6_N921617.8e-1039.1
TkA02G261270PF13428TPR_14921131.7e-0732.0
TkA02G261270PF17177PPR_long921376.3e-0523.2
TkA02G261270PF10366Vps39_1921080.001120.0
TkA02G261270PF12895ANAPC3931070.05714.4
TkA02G261270PF13176TPR_7971081.4e-0525.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFG8Arabidopsis thalianasp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g4423029.900%Swiss-ProtLow
Q9LUJ2Arabidopsis thalianasp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g2269036.400%Swiss-ProtLow
Q9LYV3Arabidopsis thalianasp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial36.000%Swiss-ProtLow
Q9XE98Arabidopsis thalianasp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g0437033.300%Swiss-ProtLow
Q9LVF9Arabidopsis thalianasp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g2147035.100%Swiss-ProtLow

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