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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G259060
Reference: TK1151 Chr: Chr02 Coordinates: 66122487-66129931 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4496 bp · TkA02G259060|TK1151|cDNA

GTTGATAATGTATTAAAGCACTAGTCAAATATAAATATTTTAAAATTTTCCTGTTTGTCTCTTTCACTTTGGTTTTGATTCCGAGCGGCATAATTACCTGCTCAGCTAGTGATCTCTCAGTGCTCTCTCTTGCCATAAAGGCAGTGTTAGCTCTGTGCACGTAACTCGACTCATCGGATTCAAAACAAAACCATCGAGTCTATTCGCATTCAGTCATTTCTTCAGAACTTCATCGGTTCAAAACTTGCATAATGGTAGAC...

CDS

Download CDS FASTA

3816 bp · TkA02G259060|TK1151|CDS

ATGGTAGACGGTTCTTATGCACCGCTGCAAGCTAATCCACCGTCTGAAACAACCGAAAATGTTACTCCGATGGCTAATGCCGGAATGTTAAGTAAGCTTACATTTTGGTGGCTGAATCCGTTGCTTATGAAAGGAAAAAGTAAAGTTCTTGACGATAATGACATCCCAAAGTTACGAAAAGAAGACACAGCAGAAGAATGCTATTCCAGATTCATGGAGACGATTAAGAAACGAAGAGAAAGGAGTGTTTCCGGTGGCCA...

Protein

Download Protein FASTA

1271 aa · TkA02G259060|TK1151|PROTEIN

MVDGSYAPLQANPPSETTENVTPMANAGMLSKLTFWWLNPLLMKGKSKVLDDNDIPKLRKEDTAEECYSRFMETIKKRRERSVSGGHGGSDPSIFSTLFVWQSKQLVITGFFALIKVLAMASGPLILRAFIQFCQGKGSFQHEGYFLTLGLFLAKCLESVSERQLKFRNRLIGLQLKSMLCAAIYQKQLRLSNDAKLSYSSGQIMNYATVDTTRIGEFPFWFHHIWTIVLQISLGIFIIYYSVGVATISALLVIILTVVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G259060
TK1151 IDTkA02G259060
OH-1004 IDLXL04_029563
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G259060
LocationChr02:66122487-66129931 (-)
DescriptionSimilar to ABCC10: ABC transporter C family member 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g59140 Pump for glutathione S-conjugates. No verified direct reference in this release
At1g04120 Pump for glutathione S-conjugates.
The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement.2001 · DOI: 10.1093/emboj/20.8.1875
The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use.2003 · DOI: 10.1046/j.1365-313x.2003.016012.x
Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance.2004 · DOI: 10.1104/pp.103.027045
The Arabidopsis ATP-binding cassette protein AtMRP5/AtABCC5 is a high affinity inositol hexakisphosphate transporter involved in guard cell signaling and phytate storage.2009 · DOI: 10.1074/jbc.m109.030247
At3g13080 Pump for glutathione S-conjugates.
An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity.1998 · DOI: 10.1046/j.1365-313x.1998.00076.x

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XCD4 ABC transporter that may affect phytic acid transport and compartmentalization. No verified direct reference in this release
Os03g0142800 ABC transporter that may affect phytic acid transport and compartmentalization.
Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.2009 · DOI: 10.1007/s00122-009-1018-1
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029563 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0030007 intracellular potassium ion homeostasis Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008281 sulfonylurea receptor activity Molecular Function
GO:0008559 ABC-type xenobiotic transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G04120
ath:AT3G59140
dosa:Os03g0142800
zma:100125659
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.462
Rank 1 · TkA02G259060 · TK1151
Lysosome / Vacuole0.224
Rank 2 · TkA02G259060 · TK1151
Cytoplasm0.178
Rank 3 · TkA02G259060 · TK1151
Endoplasmic reticulum0.167
Rank 4 · TkA02G259060 · TK1151
Golgi apparatus0.095
Rank 5 · TkA02G259060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane107-374 aa
PF03029ATP_bind_1361-417 aa
PF03193RsgA_GTPase412-471 aa
PF03308MeaB430-470 aa
PF00158Sigma54_activat431-470 aa
PF00005ABC_tran437-571 aa
PF00006ATP-synt_ab439-469 aa
PF01935DUF87440-471 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G259060PF00664ABC_membrane1073745e-49168.1
TkA02G259060PF03029ATP_bind_13614170.02115.3
TkA02G259060PF03193RsgA_GTPase4124710.000221.9
TkA02G259060PF03308MeaB4304700.003317.2
TkA02G259060PF00158Sigma54_activat4314700.05413.9
TkA02G259060PF00005ABC_tran4375712.1e-51174.8
TkA02G259060PF00006ATP-synt_ab4394690.00716.8
TkA02G259060PF01935DUF874404713.3e-0524.8
TkA02G259060PF19557BrxC-PglY_N4424670.04313.9
TkA02G259060PF13191AAA_164444713.3e-0525.2
TkA02G259060PF00270DEAD4444640.000819.9
TkA02G259060PF02367TsaE4444700.01615.9
TkA02G259060PF02463SMC_N4454703.2e-1040.5
TkA02G259060PF13476AAA_234454670.0004621.6
TkA02G259060PF12775AAA_74464720.007416.6
TkA02G259060PF05783DLIC4464770.01714.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LYS2Arabidopsis thalianasp|Q9LYS2|AB10C_ARATH ABC transporter C family member 1055.800%Swiss-ProtHigh
Q7GB25Arabidopsis thalianasp|Q7GB25|AB5C_ARATH ABC transporter C family member 543.800%Swiss-ProtMedium
Q9LK64Arabidopsis thalianasp|Q9LK64|AB3C_ARATH ABC transporter C family member 343.800%Swiss-ProtMedium
A2XCD4Oryza sativa subsp. indicasp|A2XCD4|AB13C_ORYSI ABC transporter C family member 1344.700%Swiss-ProtMedium
Q10RX7Oryza sativa subsp. japonicasp|Q10RX7|AB13C_ORYSJ ABC transporter C family member 1344.700%Swiss-ProtMedium

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