TkA02G183420 | RubberDandelionOmics

Gene overview

TkA02G183420

Reference: TK1151 Chr: Chr02 Coordinates: 47152213-47154621 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1743 bp · TkA02G183420|TK1151|cDNA

CATTCCATTTTAACTTCGTTGTGCTATTTCCTGATTTCAGGATTCGTAGCAGACACAACACCATATGATTATAGTTTTACCAGTGAGTGCTTAGAGAACGCTAAGAAACCTCAATACAATGGGGGAATAGTCCTGAACCCCAAACTGAAAGAAGGTTTAAAAGGTTGGAATTCTTTCGGCAACGTAAAACTAGAAGTAAGAGTATCAGAAACTGGAAACGAATTCATAGTTTCTTATCAAAGGAATCGATCATTCGACAG...

CDS

Download CDS FASTA

1743 bp · TkA02G183420|TK1151|CDS

CATTCCATTTTAACTTCGTTGTGCTATTTCCTGATTTCAGGATTCGTAGCAGACACAACACCATATGATTATAGTTTTACCAGTGAGTGCTTAGAGAACGCTAAGAAACCTCAATACAATGGGGGAATAGTCCTGAACCCCAAACTGAAAGAAGGTTTAAAAGGTTGGAATTCTTTCGGCAACGTAAAACTAGAAGTAAGAGTATCAGAAACTGGAAACGAATTCATAGTTTCTTATCAAAGGAATCGATCATTCGACAG...

Protein

Download Protein FASTA

580 aa · TkA02G183420|TK1151|PROTEIN

HSILTSLCYFLISGFVADTTPYDYSFTSECLENAKKPQYNGGIVLNPKLKEGLKGWNSFGNVKLEVRVSETGNEFIVSYQRNRSFDSVSQEFFLDHEKLYTFSAWVQISHGDEATVVATFRTPTSFYDAGLTKAKSGCWSMLKGGLTVNQSSSARLYFQSDNLSVDIWVDSVSLQPFSQEEWKSHQYQSIEKVRKSKVKIQAVDDEGKPLANRTLTIAQKFAKFPFGCAINKNILTKQAYKDWFTSRFKYTTFENEMKWY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G183420`
TK1151 ID	TkA02G183420
OH-1004 ID	LXL04_016156
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 97.759 / OH-1004 99.474 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G183420

Location Chr02:47152213-47154621 (-)

Description Similar to XYN5: Endo-1,4-beta-xylanase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33810`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At4g33820`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release
`At2g14690`	Binds to and hydrolyzes insoluble and soluble xylan substrates.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016156 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0045493 xylan catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0031176 endo-1,4-beta-xylanase activity Molecular Function

KEGG gene cross-reference

ath:AT1G58370

ath:AT2G14690

ath:AT4G08160

ath:AT4G33810

ath:AT4G33820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.507

Rank 1 · TkA02G183420 · TK1151

Lysosome / Vacuole0.106

Rank 2 · TkA02G183420 · TK1151

Endoplasmic reticulum0.098

Rank 3 · TkA02G183420 · TK1151

Cytoplasm0.095

Rank 4 · TkA02G183420 · TK1151

Cell membrane0.087

Rank 5 · TkA02G183420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02018CBM_4_943-160 aa

PF00331Glyco_hydro_10222-479 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G183420	`PF02018`	CBM_4_9	43	160	6.8e-07	30.5
TkA02G183420	`PF00331`	Glyco_hydro_10	222	479	2e-38	133.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A1P8B8F8`	Arabidopsis thaliana	sp\|A0A1P8B8F8\|XYN5_ARATH Endo-1,4-beta-xylanase 5	40.500%	Swiss-Prot	Medium
`Q84WT5`	Arabidopsis thaliana	sp\|Q84WT5\|XYN5L_ARATH Endo-1,4-beta-xylanase 5-like	38.000%	Swiss-Prot	Medium
`Q680B7`	Arabidopsis thaliana	sp\|Q680B7\|XYN4_ARATH Endo-1,4-beta-xylanase 4	35.200%	Swiss-Prot	Medium

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