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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G177880
Reference: TK1151 Chr: Chr02 Coordinates: 45781122-45783613 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1903 bp · TkA02G177880|TK1151|cDNA

GAAGAAGAAAGAGAAAAAGGAAAGGTTCACTTGTCGGCCTATTGGAAATACCTTACAATTGCTTATGGAGGGGCACTTGTTCCGTTGATATTGTTAGCACAAATTACATTTGAGTCCCTTCAAATATCGGGTAATTACTGGATGGCTTGGGCATCTTCTACATCCGATAGTATTGAATCCCGTATTGGAGGTTCTAAGCTTATTATTGTTTATATGGGTTTCGGAGTTGGATGCGCTTTTTGTGTTCTAGCTAGATCAAT...

CDS

Download CDS FASTA

1791 bp · TkA02G177880|TK1151|CDS

GAAGAAGAAAGAGAAAAAGGAAAGGTTCACTTGTCGGCCTATTGGAAATACCTTACAATTGCTTATGGAGGGGCACTTGTTCCGTTGATATTGTTAGCACAAATTACATTTGAGTCCCTTCAAATATCGGGTAATTACTGGATGGCTTGGGCATCTTCTACATCCGATAGTATTGAATCCCGTATTGGAGGTTCTAAGCTTATTATTGTTTATATGGGTTTCGGAGTTGGATGCGCTTTTTGTGTTCTAGCTAGATCAAT...

Protein

Download Protein FASTA

596 aa · TkA02G177880|TK1151|PROTEIN

EEEREKGKVHLSAYWKYLTIAYGGALVPLILLAQITFESLQISGNYWMAWASSTSDSIESRIGGSKLIIVYMGFGVGCAFCVLARSMLVMKAGYETANQLFNKMHFCIFRAPMSFFDSNPSGRILNRASTDQSVVDVKLSDTMILFAAVVIQLFGVVIVMSLGAWPVFLFFFPMIGICIRLQRYYIPSARELARLVGVSKAPVIQHFSETISGSTTIRSFDQTHRFKDTCLNLIDNYSMPSLHVTGALDWLGLRLDMLSC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G177880
TK1151 IDTkA02G177880
OH-1004 IDLXL04_016188
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.300
Protein coverage (%)TK1151 100.000 / OH-1004 41.132
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G177880
LocationChr02:45781122-45783613 (+)
DescriptionSimilar to ABCC3: ABC transporter C family member 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g13080 Pump for glutathione S-conjugates.
An ABC-transporter of Arabidopsis thaliana has both glutathione-conjugate and chlorophyll catabolite transport activity.1998 · DOI: 10.1046/j.1365-313x.1998.00076.x
At3g13100 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g13090 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g60160 Pump for glutathione S-conjugates. No verified direct reference in this release
At3g60970 Pump for glutathione S-conjugates. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016188 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0051707 response to other organism Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0048046 apoplast Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008559 ABC-type xenobiotic transporter activity Molecular Function
KEGG gene cross-reference
ath:AT3G13080
ath:AT3G13090
ath:AT3G13100
dosa:Os03g0142800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.459
Rank 1 · TkA02G177880 · TK1151
Lysosome / Vacuole0.250
Rank 2 · TkA02G177880 · TK1151
Cytoplasm0.143
Rank 3 · TkA02G177880 · TK1151
Endoplasmic reticulum0.142
Rank 4 · TkA02G177880 · TK1151
Golgi apparatus0.074
Rank 5 · TkA02G177880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane47-272 aa
PF10003DUF2244143-185 aa
PF00005ABC_tran363-511 aa
PF00006ATP-synt_ab365-397 aa
PF13476AAA_23368-393 aa
PF13555AAA_29370-393 aa
PF12846AAA_10374-560 aa
PF02463SMC_N375-394 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G177880PF00664ABC_membrane472722.8e-32113.2
TkA02G177880PF10003DUF22441431850.1612.5
TkA02G177880PF00005ABC_tran3635115.5e-2899.0
TkA02G177880PF00006ATP-synt_ab3653970.212.0
TkA02G177880PF13476AAA_233683930.02915.8
TkA02G177880PF13555AAA_293703930.00218.6
TkA02G177880PF12846AAA_103745600.2411.1
TkA02G177880PF02463SMC_N3753940.0001222.3
TkA02G177880PF01926MMR_HSR13763950.01216.5
TkA02G177880PF01935DUF873764060.03614.9
TkA02G177880PF13304AAA_213763960.05414.2
TkA02G177880PF13604AAA_303764050.1512.5
TkA02G177880PF00931NB-ARC3773971.98.7
TkA02G177880PF19044P-loop_TraG3784370.005116.2
TkA02G177880PF13401AAA_223784000.08213.9
TkA02G177880PF13191AAA_163783990.113.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LK64Arabidopsis thalianasp|Q9LK64|AB3C_ARATH ABC transporter C family member 367.400%Swiss-ProtHigh
Q9LK62Arabidopsis thalianasp|Q9LK62|AB7C_ARATH ABC transporter C family member 761.900%Swiss-ProtHigh
Q8VZZ4Arabidopsis thalianasp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 661.400%Swiss-ProtHigh
Q9M1C7Arabidopsis thalianasp|Q9M1C7|AB9C_ARATH ABC transporter C family member 958.000%Swiss-ProtHigh
Q7FB56Arabidopsis thalianasp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 1557.500%Swiss-ProtHigh

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