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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G175270
Reference: TK1151 Chr: Chr02 Coordinates: 45142247-45148571 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4609 bp · TkA02G175270|TK1151|cDNA

ATAAAGTATAAAGACTTGCCTCCACAATCATTTTTTTAAATCAAAAATTCGTGATCCGTCTTTTTATGTTGTCCCTACATCGATAAAATAACTAGTGTGGGAGAAATAATTGATGCGCTTTTTCCCTTTATAATTTTTTCAAAGTTTCAAAAGGAAAAGCGAACAATAAGGTAAAAGTAAAAGAAAATTTCTATTTTCCACCGAAAGAAACCATATTCACAATATGATTTTATTATTTTGGTAAAACTTGTTCTAAGCTG...

CDS

Download CDS FASTA

4116 bp · TkA02G175270|TK1151|CDS

ATGACATCAAACCAGAGCTTAAGAGATCTTCAATGGCTTCTTCAATCTATTCAAACTGAAAGTCTCGACCTTAAAAGCATCTCCTTCCATCTTTCTCAACCGTCATCATGTTGTCATCAAGAAACCCAAGATTCGATTCATATAAACATTTCAAGCGATTCCCATTTCCAGTTTTCCAACATTATAGCATCCCTTTCAACATCTCCCAAAACCCACAATTTGCTGCAAAATCTCGAGTTTTATCAAGTTGAATGGCGGGT...

Protein

Download Protein FASTA

1371 aa · TkA02G175270|TK1151|PROTEIN

MTSNQSLRDLQWLLQSIQTESLDLKSISFHLSQPSSCCHQETQDSIHINISSDSHFQFSNIIASLSTSPKTHNLLQNLEFYQVEWRVEEMRGLEVLLDGSINVKQLEFKANRLNAQCMKELSKILRKNETIKEVILSESRIGSLGATLISSALKVNSCLEELQIWEDAIGSKGAEELSKMIEANSTLKLLIIFDSSSITATPLISAVLARNRSMEVHLWSGKRNKNNSSKVVEFAPESSTLRIYRLSTSGACRVTGALGW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G175270
TK1151 IDTkA02G175270
OH-1004 IDLXL04_016198
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G175270
LocationChr02:45142247-45148571 (-)
DescriptionSimilar to TRN1: Protein TORNADO 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g55540 Involved in the basipetal transport of auxin (IAA) that modulates growth and organs organization.
LOP1: a gene involved in auxin transport and vascular patterning in Arabidopsis.1996 · DOI: 10.1242/dev.122.6.1811

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016198 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000723 telomere maintenance Biological Process
GO:0007163 establishment or maintenance of cell polarity Biological Process
GO:0007165 signal transduction Biological Process
GO:0007249 canonical NF-kappaB signal transduction Biological Process
GO:0007264 small GTPase-mediated signal transduction Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009825 multidimensional cell growth Biological Process
GO:0009926 auxin polar transport Biological Process
GO:0009933 meristem structural organization Biological Process
GO:0009956 radial pattern formation Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
KEGG gene cross-reference
ath:AT5G55540
ddi:DDB_G0291079
hsa:197358
rno:499589
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.433
Rank 1 · TkA02G175270 · TK1151
Nucleus0.275
Rank 2 · TkA02G175270 · TK1151
Mitochondrion0.214
Rank 3 · TkA02G175270 · TK1151
Cell membrane0.173
Rank 4 · TkA02G175270 · TK1151
Endoplasmic reticulum0.101
Rank 5 · TkA02G175270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25497COR-B41-83 aa
PF05714PFam54_6049-78 aa
PF29255LRR_NLRC397-214 aa
PF27087LRR_TMOD-LMOD97-189 aa
PF05714PFam54_60111-127 aa
PF29265LRR_CARMIL115-203 aa
PF13516LRR_6127-149 aa
PF13516LRR_6156-177 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G175270PF25497COR-B41831.9e-1351.1
TkA02G175270PF05714PFam54_6049781.49.2
TkA02G175270PF29255LRR_NLRC3972147.7e-2691.5
TkA02G175270PF27087LRR_TMOD-LMOD971891e-2177.9
TkA02G175270PF05714PFam54_601111271.49.2
TkA02G175270PF29265LRR_CARMIL1152031.9e-1040.7
TkA02G175270PF13516LRR_61271491.5e-1041.0
TkA02G175270PF13516LRR_61561771.5e-1041.0
TkA02G175270PF08477Roc1611951.1e-0526.3
TkA02G175270PF29255LRR_NLRC32454517.7e-2691.5
TkA02G175270PF27087LRR_TMOD-LMOD2533301e-2177.9
TkA02G175270PF13516LRR_62612711.5e-1041.0
TkA02G175270PF29265LRR_CARMIL2633491.9e-1040.7
TkA02G175270PF13516LRR_62883101.5e-1041.0
TkA02G175270PF27087LRR_TMOD-LMOD3003911e-2177.9
TkA02G175270PF13516LRR_63163361.5e-1041.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJ57Arabidopsis thalianasp|Q9FJ57|TRN1_ARATH Protein TORNADO 165.800%Swiss-ProtHigh

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