TkA02G160330 | RubberDandelionOmics

Gene overview

TkA02G160330

Reference: TK1151 Chr: Chr02 Coordinates: 41130395-41131012 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

393 bp · TkA02G160330|TK1151|cDNA

ATGGGAAAACATTACGTAGAGGATGATGCATGGCATAAAAAATTTATTGTTTTAGATAATGTGGATCATATTGACCAAATCAAGGCTTTAGTTAGTGAGCCTAACTGGTTTAAGGCAGGAAGTAGAATCATCATTACAACAAGAGATGAAAAAATGCTTGTAGCACACTGCGTCAAGTTTATTCGTAATGCAGATTTGTTGTATTTTTCAGCGATTTTTTTTTCATTTCCTAACGATCTCTACCTTTTTATGTTTAGCAA...

CDS

Download CDS FASTA

393 bp · TkA02G160330|TK1151|CDS

ATGGGAAAACATTACGTAGAGGATGATGCATGGCATAAAAAATTTATTGTTTTAGATAATGTGGATCATATTGACCAAATCAAGGCTTTAGTTAGTGAGCCTAACTGGTTTAAGGCAGGAAGTAGAATCATCATTACAACAAGAGATGAAAAAATGCTTGTAGCACACTGCGTCAAGTTTATTCGTAATGCAGATTTGTTGTATTTTTCAGCGATTTTTTTTTCATTTCCTAACGATCTCTACCTTTTTATGTTTAGCAA...

Protein

Download Protein FASTA

130 aa · TkA02G160330|TK1151|PROTEIN

MGKHYVEDDAWHKKFIVLDNVDHIDQIKALVSEPNWFKAGSRIIITTRDEKMLVAHCVKFIRNADLLYFSAIFFSFPNDLYLFMFSKSFSNYLDLFTDFKKYHIIKDRVNSMLSSLLTLHYFHKLIQAPR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G160330`
TK1151 ID	TkA02G160330
OH-1004 ID	LXL04_007144
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	59.700
Protein coverage (%)	TK1151 50.769 / OH-1004 6.844 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G160330

Location Chr02:41130395-41131012 (+)

Description Similar to RPV1: Disease resistance protein RPV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18370`	TIR-NB-LRR receptor-like protein involved in plant defense.	Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005
`At4g11170`	Putative disease resistance protein At4g11170.	No verified direct reference in this release
`At4g19510`	Disease resistance protein that cooperates with RPP2A to confer resistance to Hyaloperonospora parasitica isolate Cala2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007144 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.342

Rank 1 · TkA02G160330 · TK1151

Nucleus0.293

Rank 2 · TkA02G160330 · TK1151

Endoplasmic reticulum0.151

Rank 3 · TkA02G160330 · TK1151

Mitochondrion0.124

Rank 4 · TkA02G160330 · TK1151

Extracellular0.112

Rank 5 · TkA02G160330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JWM0`	Arabidopsis thaliana	sp\|F4JWM0\|DSC2_ARATH Disease resistance-like protein DSC2	47.300%	Swiss-Prot	Low
`O82500`	Arabidopsis thaliana	sp\|O82500\|Y4117_ARATH Putative disease resistance protein At4g11170	50.000%	Swiss-Prot	Low
`F4JT80`	Arabidopsis thaliana	sp\|F4JT80\|RPP2B_ARATH Disease resistance protein RPP2B	46.400%	Swiss-Prot	Low

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