TkA02G142880 | RubberDandelionOmics

Gene overview

TkA02G142880

Reference: TK1151 Chr: Chr02 Coordinates: 36920405-36924199 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2750 bp · TkA02G142880|TK1151|cDNA

TTCCGTTCGATCACCCTGAAAACCAAAGGAAAATGTCAACAATCAAAGATTAAATATTGAAACTGAAAGACACAAGAAATATAGATGGAGAAATTATTAGAACACAATTTGAAGAGAATTGGTGGTAGATGACGGCATCAATGGTGGAAGAATTACGAGTCACCAAGTTTTGGCTTTGCATCGTTGTACTTTCTGCATTGACAACTTGTACCACGGCGGTAGACACCATCTTAGCAAACCAAACCATTAAAGACGGCGAA...

CDS

Download CDS FASTA

1296 bp · TkA02G142880|TK1151|CDS

ATGACGGCATCAATGGTGGAAGAATTACGAGTCACCAAGTTTTGGCTTTGCATCGTTGTACTTTCTGCATTGACAACTTGTACCACGGCGGTAGACACCATCTTAGCAAACCAAACCATTAAAGACGGCGAAACCATCGTTTCAGCTCAAAACACCTTCGAGCTTGGTTTCTTCAGCCCCGTAAACTCCACAAACCGGTACGTCGGGATCTGGTACAAGAGAATTTCAACCGGCACAGTTGTGTGGGTCGCAAACCGGAA...

Protein

Download Protein FASTA

431 aa · TkA02G142880|TK1151|PROTEIN

MTASMVEELRVTKFWLCIVVLSALTTCTTAVDTILANQTIKDGETIVSAQNTFELGFFSPVNSTNRYVGIWYKRISTGTVVWVANRNSPLTNTSGELHLTLHGILVIRSSTGDVIWSSTNSSVRNPVGQLFDTGNFIIRDGENRENPVWQSFDYPTDTFVPGMKFGKDLVTGLERHFTSWKSDGDPSDGKFTVSVDIQGYPQVIVRKDSVIVFRAGPWNGVRFSGEPQLRPNSIYTFGFVLDQKEMYYHFELINSSVITR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G142880`
TK1151 ID	TkA02G142880
OH-1004 ID	LXL04_016429
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	83.600
Protein coverage (%)	TK1151 99.304 / OH-1004 51.135 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G142880

Location Chr02:36920405-36924199 (+)

Description Similar to At4g27290: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27290`	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290.	No verified direct reference in this release
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At4g21370`	Truncated and inactivated form of SRK, the female specificity determinant of self-incompatibility when active.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016429 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G65790

ath:AT1G65800

ath:AT4G21380

ath:AT4G27290

ath:AT4G27300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.442

Rank 1 · TkA02G142880 · TK1151

Cell membrane0.341

Rank 2 · TkA02G142880 · TK1151

Endoplasmic reticulum0.104

Rank 3 · TkA02G142880 · TK1151

Cytoplasm0.069

Rank 4 · TkA02G142880 · TK1151

Lysosome / Vacuole0.035

Rank 5 · TkA02G142880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin79-181 aa

PF00954S_locus_glycop213-321 aa

PF08276PAN_2292-314 aa

PF00954S_locus_glycop335-351 aa

PF08276PAN_2343-409 aa

PF00954S_locus_glycop371-384 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G142880	`PF01453`	B_lectin	79	181	6.6e-35	120.5
TkA02G142880	`PF00954`	S_locus_glycop	213	321	1.4e-29	103.5
TkA02G142880	`PF08276`	PAN_2	292	314	4.4e-20	72.3
TkA02G142880	`PF00954`	S_locus_glycop	335	351	1.4e-29	103.5
TkA02G142880	`PF08276`	PAN_2	343	409	4.4e-20	72.3
TkA02G142880	`PF00954`	S_locus_glycop	371	384	1.4e-29	103.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81832`	Arabidopsis thaliana	sp\|O81832\|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	51.700%	Swiss-Prot	High
`O81905`	Arabidopsis thaliana	sp\|O81905\|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8	42.500%	Swiss-Prot	Medium
`P0DH87`	Arabidopsis thaliana	sp\|P0DH87\|PSRK_ARATH Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK	39.200%	Swiss-Prot	Medium

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