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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G142410
Reference: TK1151 Chr: Chr02 Coordinates: 36778678-36784450 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2874 bp · TkA02G142410|TK1151|cDNA

AAGAACTTCAAATCAGGGGCCCAAAGCAAAAAAGAAGAAGTGATACGTTGTTTTGGCGTGTCGAATTGAACAGGAAGGACTGCTTTCCAAGAAACCCAAACACAGAGGGTATCCTTTTTCGGCGAAGAGTCGCATACATATTGCTAGGGCATCGAATACACAGGCTTCCCTTCTCCGTTATTTAATCCATTAGAACTATCATCTAAACAGTTAGAGTCACCATTTGTTGGCGATGGAAGTTCTCCGAATGAATCTGTCAA...

CDS

Download CDS FASTA

2376 bp · TkA02G142410|TK1151|CDS

ATGGAAGTTCTCCGAATGAATCTGTCAAAGGTCCGTATTCCGGAGCCTACCAATCGCATATACAAGCAAGAATGCTGCATCAGTTTCGAAACTCCGAAATCCGAAGGTGGATTGTTTGTGGACATGAACACATTCCTTGCATTTGGAAAGGATTACGTTGGTTGGAACTTTGAGAAAACTGGTAACCCGGTTTATCTGCACATCAAACAAACAAAGAAGGCGATCCCTGAAGATAGACCTTTGAAGAAACCTACTCTCTT...

Protein

Download Protein FASTA

791 aa · TkA02G142410|TK1151|PROTEIN

MEVLRMNLSKVRIPEPTNRIYKQECCISFETPKSEGGLFVDMNTFLAFGKDYVGWNFEKTGNPVYLHIKQTKKAIPEDRPLKKPTLLAIGIDGGFDNQEPEYDEKYNIVILPDYTTLPFPSVALPEKVRLAVDAILIAEGAERKEQLASWTADKKQTSEYALTLKQIDNAVIIPPSGWKCAKCDKTENLWLNLTDGMILCGRKLWDGSGGNNHAIDHYNETHYPLAVKLGTITSDLEGADVFSYPEDESVTDPLLAEHLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G142410
TK1151 IDTkA02G142410
OH-1004 IDLXL04_037353
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)71.900
Protein coverage (%)TK1151 14.412 / OH-1004 45.912
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G142410
LocationChr02:36778678-36784450 (-)
DescriptionSimilar to UBP14: Ubiquitin carboxyl-terminal hydrolase 14
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20630 Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin.
The ubiquitin-specific protease UBP14 is essential for early embryo development in Arabidopsis thaliana.2001 · DOI: 10.1046/j.1365-313x.2001.01106.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037353 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0016579 protein deubiquitination Biological Process
GO:0042127 regulation of cell population proliferation Biological Process
GO:0048767 root hair elongation Biological Process
GO:0071370 cellular response to gibberellin stimulus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT2G42520
ath:AT3G20630
ath:AT3G58570
dosa:Os03g0805200
dosa:Os07g0202100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.613
Rank 1 · TkA02G142410 · TK1151
Nucleus0.594
Rank 2 · TkA02G142410 · TK1151
Mitochondrion0.048
Rank 3 · TkA02G142410 · TK1151
Cell membrane0.038
Rank 4 · TkA02G142410 · TK1151
Endoplasmic reticulum0.034
Rank 5 · TkA02G142410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17807zf-UBP_var11-73 aa
PF02148zf-UBP180-254 aa
PF17807zf-UBP_var208-229 aa
PF00443UCH308-788 aa
PF13423UCH_1408-585 aa
PF17807zf-UBP_var516-530 aa
PF00627UBA615-652 aa
PF22562UBA_7616-663 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G142410PF17807zf-UBP_var11731.5e-2486.2
TkA02G142410PF02148zf-UBP1802547.7e-1865.2
TkA02G142410PF17807zf-UBP_var2082291.5e-2486.2
TkA02G142410PF00443UCH3087884.8e-45154.9
TkA02G142410PF13423UCH_14085851.6e-0732.0
TkA02G142410PF17807zf-UBP_var5165301.5e-2486.2
TkA02G142410PF00627UBA6156521.4e-1970.2
TkA02G142410PF22562UBA_76166637.2e-33113.0
TkA02G142410PF24899UBA_DHX296186533.1e-0524.4
TkA02G142410PF25025EF-Ts_N6276530.08613.5
TkA02G142410PF00627UBA6747101.4e-1970.2
TkA02G142410PF22562UBA_76757207.2e-33113.0
TkA02G142410PF24899UBA_DHX296817103.1e-0524.4
TkA02G142410PF14555UBA_46867080.2411.9
TkA02G142410PF22566UBA_86877120.1312.8
TkA02G142410PF25025EF-Ts_N6927100.08613.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L6Y1Arabidopsis thalianasp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 1473.800%Swiss-ProtHigh

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