TkA02G131320 | RubberDandelionOmics

Gene overview

TkA02G131320

Reference: TK1151 Chr: Chr02 Coordinates: 34006314-34008387 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

949 bp · TkA02G131320|TK1151|cDNA

CCGCGATGATGCCGCGATCGACCACATGTTTTCTCTCGTTTCCCATTTCCGGCGACCACTCCGGCGAGGCACCATCAAAATTCCGGCGACAAGTCTGTCACCTCCTTCGCTGGAACGGTTAGGGTTTGTCTCGTGCACTCCGACGAGAAGCTGCCCCCTGCGCCATCTTCCTCGTTTATCTGGTCACCAACCCTTCTTCTTCTCGACGCTGCAAACCGGCCTCCCTCCGCCCTCCACCTTCTTCGCTGCTGCACCCAAAG...

CDS

Download CDS FASTA

480 bp · TkA02G131320|TK1151|CDS

ATGCAATCATTTATGAAGATATATGGTGAACGAGCACAGGCCCCTGGAGCTGTAATCATTGATGGTGGTTCTGGCTACTGCAACTTTGGGTGGAGCAGATTGGATTCTCCGTCTGGGAGGTCAGCAACATTCTTGGTGTTTTTCAGAGGGAGTTTTAAGGTCTGTTTGTTGAGTTTTCAGAGGGAGTTTGGAGCAAGCAGAAGGTCAATTGTCCCATTCTCGGAAGAATCACAACTTGCGAAAATTACACGAGATAGTGC...

Protein

Download Protein FASTA

159 aa · TkA02G131320|TK1151|PROTEIN

MQSFMKIYGERAQAPGAVIIDGGSGYCNFGWSRLDSPSGRSATFLVFFRGSFKVCLLSFQREFGASRRSIVPFSEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSNKSQESHLEVLNQWFNLEDGVSFDTLNLKMVEKCQIENLVVVKWVE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G131320`
TK1151 ID	TkA02G131320
OH-1004 ID	LXL04_018582
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.000
Protein coverage (%)	TK1151 35.849 / OH-1004 10.857 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G131320

Location Chr02:34006314-34008387 (+)

Description Similar to ARP8: Actin-related protein 8

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56180`	Actin-related protein 8.	No verified direct reference in this release
`At1g22920`	Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses.	Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations.1998 · DOI: 10.1105/tpc.10.11.1779
`At1g71230`	Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses.	Arabidopsis homologs of a c-Jun coactivator are present both in monomeric form and in the COP9 complex, and their abundance is differentially affected by the pleiotropic cop/det/fus mutations.1998 · DOI: 10.1105/tpc.10.11.1779

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0654700`	Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (By similarity).	CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.2016 · DOI: 10.1038/srep25485
`UniProt: A8WAT2`	Actin-related protein 8.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018582 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0030029 actin filament-based process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015629 actin cytoskeleton Cellular Component

GO:0005200 structural constituent of cytoskeleton Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G56180

dosa:Os04g0667700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.475

Rank 1 · TkA02G131320 · TK1151

Nucleus0.363

Rank 2 · TkA02G131320 · TK1151

Mitochondrion0.179

Rank 3 · TkA02G131320 · TK1151

Cell membrane0.060

Rank 4 · TkA02G131320 · TK1151

Endoplasmic reticulum0.051

Rank 5 · TkA02G131320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18323CSN5_C74-108 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G131320	`PF18323`	CSN5_C	74	108	2.7e-12	47.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKT0`	Arabidopsis thaliana	sp\|Q9FKT0\|ARP8_ARATH Actin-related protein 8	75.600%	Swiss-Prot	Low
`Q8LAZ7`	Arabidopsis thaliana	sp\|Q8LAZ7\|CSN5A_ARATH COP9 signalosome complex subunit 5a	86.400%	Swiss-Prot	Low
`Q9FVU9`	Arabidopsis thaliana	sp\|Q9FVU9\|CSN5B_ARATH COP9 signalosome complex subunit 5b	90.000%	Swiss-Prot	Low
`Q8H936`	Oryza sativa subsp. japonica	sp\|Q8H936\|CSN5_ORYSJ COP9 signalosome complex subunit 5	80.000%	Swiss-Prot	Low
`A8WAT2`	Oryza sativa subsp. indica	sp\|A8WAT2\|ARP8_ORYSI Actin-related protein 8	60.000%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card