TkA02G114990 | RubberDandelionOmics

Gene overview

TkA02G114990

Reference: TK1151 Chr: Chr02 Coordinates: 30031403-30038242 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

553 bp · TkA02G114990|TK1151|cDNA

ATGACGTCTCACGTGATTTTCTTTGCTCTCATGGTGATGAGCTGTTCGCTTGCCTTTGCTTCAGATCCTAGTCCTCTCCAGGACTTCTGTGTGGCTGACCAAAATAGCAAAGTTTTGGTGAATGGCTTCGTTTGCAAAGATCCTATGCTTGTAAAAGCGGATGATTTTTTTTATAGTGGACTCCAACTTATGGGAAATACTTCGAATGCGGTTGGGTTTGCAGTGACTCCTGTGACTGTAGTAGAGTTGCCGGGACTTAA...

CDS

Download CDS FASTA

552 bp · TkA02G114990|TK1151|CDS

ATGACGTCTCACGTGATTTTCTTTGCTCTCATGGTGATGAGCTGTTCGCTTGCCTTTGCTTCAGATCCTAGTCCTCTCCAGGACTTCTGTGTGGCTGACCAAAATAGCAAAGTTTTGGTGAATGGCTTCGTTTGCAAAGATCCTATGCTTGTAAAAGCGGATGATTTTTTTTATAGTGGACTCCAACTTATGGGAAATACTTCGAATGCGGTTGGGTTTGCAGTGACTCCTGTGACTGTAGTAGAGTTGCCGGGACTTAA...

Protein

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184 aa · TkA02G114990|TK1151|PROTEIN

MTSHVIFFALMVMSCSLAFASDPSPLQDFCVADQNSKVLVNGFVCKDPMLVKADDFFYSGLQLMGNTSNAVGFAVTPVTVVELPGLNTLGISMARSIQVGFVTSNPENRLITKVLNKGDVLVFPEGLIHFQKNMGYGYAVAIAALSSQNPGVITIANAVFGSNPDIAGDILAKAFEVDINVVYQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G114990`
TK1151 ID	TkA02G114990
OH-1004 ID	LXL04_027886
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	59.200
Protein coverage (%)	TK1151 95.109 / OH-1004 13.701 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G114990

Location Chr02:30031403-30038242 (+)

Description Similar to Os02g0491600: Putative germin-like protein 2-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g38940`	May play a role in plant defense.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0491600`	May play a role in plant defense.	No verified direct reference in this release
`Os08g0189100`	Plays a role in broad-spectrum disease resistance.	No verified direct reference in this release
`Os02g0491700`	May play a role in plant defense.	No verified direct reference in this release
`Os02g0491800`	May play a role in plant defense.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027886 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0048046 apoplast Cellular Component

GO:0030145 manganese ion binding Molecular Function

KEGG gene cross-reference

dosa:Os02g0491600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.474

Rank 1 · TkA02G114990 · TK1151

Lysosome / Vacuole0.258

Rank 2 · TkA02G114990 · TK1151

Cytoplasm0.128

Rank 3 · TkA02G114990 · TK1151

Endoplasmic reticulum0.112

Rank 4 · TkA02G114990 · TK1151

Cell membrane0.043

Rank 5 · TkA02G114990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00190Cupin_164-95 aa

PF00190Cupin_197-181 aa

PF08007JmjC_2110-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G114990	`PF00190`	Cupin_1	64	95	4.3e-28	98.5
TkA02G114990	`PF00190`	Cupin_1	97	181	4.3e-28	98.5
TkA02G114990	`PF08007`	JmjC_2	110	137	0.053	13.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FMA8`	Arabidopsis thaliana	sp\|Q9FMA8\|GL111_ARATH Germin-like protein subfamily 1 member 11	54.300%	Swiss-Prot	High
`Q6K5Q0`	Oryza sativa subsp. japonica	sp\|Q6K5Q0\|GL21_ORYSJ Putative germin-like protein 2-1	60.500%	Swiss-Prot	High
`Q6YZA9`	Oryza sativa subsp. japonica	sp\|Q6YZA9\|GL82_ORYSJ Germin-like protein 8-2	58.200%	Swiss-Prot	High
`Q6K5P9`	Oryza sativa subsp. japonica	sp\|Q6K5P9\|GL22_ORYSJ Putative germin-like protein 2-2	56.200%	Swiss-Prot	High
`Q6K5P8`	Oryza sativa subsp. japonica	sp\|Q6K5P8\|GL23_ORYSJ Putative germin-like protein 2-3	57.600%	Swiss-Prot	High

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