TkA02G091470 | RubberDandelionOmics

Gene overview

TkA02G091470

Reference: TK1151 Chr: Chr02 Coordinates: 23817075-23821358 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1616 bp · TkA02G091470|TK1151|cDNA

CCCAAACACCCTAATTATTATCCCATTTTTGTCATCTAGTGAGTTTTGATGAGTTGACTGCGGTTATATTCTGGAGGCAGCCATCGCAGGAAAACATCTGTTGCTGAATCCACACTGAATCCAGCACCTACCCTTCCCGGCGGCGGTTGCTGTTCCTTTCGCTCCTTGAAATTATCGCCGGAGAAAAAAAGAGAGGAAGGCGGCGATGTCTCTCATTCAAACATCTCTACAGCAATGTCCGGCATCCGCTACCGCTTTCT...

CDS

Download CDS FASTA

975 bp · TkA02G091470|TK1151|CDS

ATGGCTACCGATACGCTCGATCTTCTCAAAGATTGTCAATTATCGGTGAGGCAACTTAATCCTCGGCAATACGTTGCAGACATTCCTCAGCTCTCAAATGTAGAAGTCTGGTTTCAAGCGTCCAAAGATATCGTACGGAAACTGGTTGCAGGAGATTTAGATCTTGGTATTGTTGGTCTTGACATTGTCAGTGAATTTGGGCAGGGAAATGAAGATTTAGTCCTTGTTCATGATGAACTTGCATATGGAGATTGTCGTTT...

Protein

Download Protein FASTA

324 aa · TkA02G091470|TK1151|PROTEIN

MATDTLDLLKDCQLSVRQLNPRQYVADIPQLSNVEVWFQASKDIVRKLVAGDLDLGIVGLDIVSEFGQGNEDLVLVHDELAYGDCRLSLAIPKYGIFEKINSVKELAQMPQWTAEKPLRVATGFTYLGPKFLKENGLEHVVFSTADGALEAAPAMGIADAIVDLVSSGTTLKENNLKEIEGGVLLESQAVLVASKKSLLERKGLLDITHEVLERFEAHLRALGQFTVVANMRGSSAEEVSERILSQPSLAGLQGPTVSPV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G091470`
TK1151 ID	TkA02G091470
OH-1004 ID	LXL04_016936
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 81.407 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G091470

Location Chr02:23817075-23821358 (-)

Description Similar to HISN1B: ATP phosphoribosyltransferase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09795`	Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP).	No verified direct reference in this release
`At1g58080`	Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0134300`	Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016936 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000105 L-histidine biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0003879 ATP phosphoribosyltransferase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G09795

ath:AT1G58080

bfr:BF3190

dosa:Os03g0134300

gau:GAU_0140

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.494

Rank 1 · TkA02G091470 · TK1151

Nucleus0.256

Rank 2 · TkA02G091470 · TK1151

Plastid0.252

Rank 3 · TkA02G091470 · TK1151

Mitochondrion0.067

Rank 4 · TkA02G091470 · TK1151

Cell membrane0.066

Rank 5 · TkA02G091470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01634HisG42-204 aa

PF02719Polysacc_synt_2133-234 aa

PF08029HisG_C223-305 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G091470	`PF01634`	HisG	42	204	9.3e-38	130.4
TkA02G091470	`PF02719`	Polysacc_synt_2	133	234	0.084	12.8
TkA02G091470	`PF08029`	HisG_C	223	305	1.2e-12	48.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GSJ1`	Arabidopsis thaliana	sp\|Q8GSJ1\|HIS1B_ARATH ATP phosphoribosyltransferase 2, chloroplastic	78.400%	Swiss-Prot	High
`Q9S762`	Arabidopsis thaliana	sp\|Q9S762\|HIS1A_ARATH ATP phosphoribosyltransferase 1, chloroplastic	77.200%	Swiss-Prot	High
`Q10S55`	Oryza sativa subsp. japonica	sp\|Q10S55\|HIS1_ORYSJ ATP phosphoribosyltransferase, chloroplastic	71.000%	Swiss-Prot	High

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