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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G084450
Reference: TK1151 Chr: Chr02 Coordinates: 21926912-21928099 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1188 bp · TkA02G084450|TK1151|cDNA

ATGCACAAACTGATTCGCCTAGCTGCATTATTTACTTTGTCCATTAACAACGAACAAGAAAATTTAGTACAATCTGGTGAAGCATTGGTGAAGCCCATGGATGTGGAATGTTGGAAAAACAAGAGATGGATCTCACTGGTTGACAGTAAAATGAATGCTATATCTGACCAACCAAATTGTCAAACGCTTTCGACTCTGTTTTTTCAGAAAAATCCAAATTTAATAGACATTCCACAAGAATTCTTTAAATATATGCAAGG...

CDS

Download CDS FASTA

1188 bp · TkA02G084450|TK1151|CDS

ATGCACAAACTGATTCGCCTAGCTGCATTATTTACTTTGTCCATTAACAACGAACAAGAAAATTTAGTACAATCTGGTGAAGCATTGGTGAAGCCCATGGATGTGGAATGTTGGAAAAACAAGAGATGGATCTCACTGGTTGACAGTAAAATGAATGCTATATCTGACCAACCAAATTGTCAAACGCTTTCGACTCTGTTTTTTCAGAAAAATCCAAATTTAATAGACATTCCACAAGAATTCTTTAAATATATGCAAGG...

Protein

Download Protein FASTA

395 aa · TkA02G084450|TK1151|PROTEIN

MHKLIRLAALFTLSINNEQENLVQSGEALVKPMDVECWKNKRWISLVDSKMNAISDQPNCQTLSTLFFQKNPNLIDIPQEFFKYMQGLRVLNLYDTGITSLPQSFLNLVTLKVLCLQECVALVELPLDTIKFQNLEVLDVHGSGLAHIPPQVKNLNCLKRLLISFTRLSSSSHIQEAPNDIEVISKIPMLRELVIDVKEGEAIVLYELIVEVFKLTILSLLQFCFPKKVVNLIQAMGGNWKINFPAEILITEYISKADSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G084450
TK1151 IDTkA02G084450
OH-1004 IDLXL04_016998
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 96.962 / OH-1004 87.844
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G084450
LocationChr02:21926912-21928099 (+)
DescriptionSimilar to At4g10780: Putative disease resistance protein At4g10780
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016998 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009617 response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT1G12210
ath:AT1G61180
ath:AT4G10780
ath:AT4G27190
ath:AT5G47260
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.476
Rank 1 · TkA02G084450 · TK1151
Nucleus0.315
Rank 2 · TkA02G084450 · TK1151
Cell membrane0.138
Rank 3 · TkA02G084450 · TK1151
Endoplasmic reticulum0.114
Rank 4 · TkA02G084450 · TK1151
Extracellular0.070
Rank 5 · TkA02G084450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598LRR_142-19 aa
PF13855LRR_87-16 aa
PF23598LRR_1446-229 aa
PF12799LRR_452-77 aa
PF13855LRR_863-117 aa
PF00560LRR_163-82 aa
PF25019LRR_R13L1-DRL2182-141 aa
PF25013LRR_Zer-182-192 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G084450PF23598LRR_142191.9e-1247.4
TkA02G084450PF13855LRR_87163.2e-0730.7
TkA02G084450PF23598LRR_14462291.9e-1247.4
TkA02G084450PF12799LRR_452770.0008920.1
TkA02G084450PF13855LRR_8631173.2e-0730.7
TkA02G084450PF00560LRR_163820.09613.6
TkA02G084450PF25019LRR_R13L1-DRL21821410.05214.2
TkA02G084450PF25013LRR_Zer-1821920.08513.7
TkA02G084450PF12799LRR_4871180.0008920.1
TkA02G084450PF00560LRR_1881080.09613.6
TkA02G084450PF12799LRR_41101420.0008920.1
TkA02G084450PF00560LRR_11111190.09613.6
TkA02G084450PF13855LRR_81231683.2e-0730.7
TkA02G084450PF12799LRR_41331720.0008920.1
TkA02G084450PF00560LRR_11341550.09613.6
TkA02G084450PF25019LRR_R13L1-DRL211562030.05214.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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