TkA02G079690 | RubberDandelionOmics

Gene overview

TkA02G079690

Reference: TK1151 Chr: Chr02 Coordinates: 20730560-20736200 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2255 bp · TkA02G079690|TK1151|cDNA

TTGAATAAGTCGTCATAGTGGTTCTATTTCATTGGGGTTATTTTTAGTATTTGACATTGTAGTTGCAGTCTTTTTTTTTCAACGTGAATAACAGCAGAAAATTGCCCCAAAAGACCTTCATCTTCTTCCTCTGTTTTACCCTGTTCTTTGTTGTTTCTTCACAGGAAAAGAACAGCCCCTGTTTTAGTTGAACAATAAACACAATCGAGTATTCTTCAATTGTTGTTTCGACGTTCCAAAAACCATGTCTGATCTTCTTT...

CDS

Download CDS FASTA

1953 bp · TkA02G079690|TK1151|CDS

ATGTCTGATCTTCTTTACTCTCTCCTCCTCTTCCCCTTCTTCTTCATCATCCCCATTGCTGCTCAATCCAATGATTCCAGTTACCCCAACTGCCGTCCATACAGATGCAGAAACATCAATATCAGCTACCCTTTTTGGAGGATCGGCAGTGAATCCACCACCCAGTTCTGCGGTTATCCTGGTTTTGGAATTAACTGTTTCAACGACGGTGAACGTTCTTTTCCAAGTATTACTTTGGGGAACGATTCTTACTCTATCCC...

Protein

Download Protein FASTA

650 aa · TkA02G079690|TK1151|PROTEIN

MSDLLYSLLLFPFFFIIPIAAQSNDSSYPNCRPYRCRNINISYPFWRIGSESTTQFCGYPGFGINCFNDGERSFPSITLGNDSYSIPNIIYERESIVLIDDDVSNADSIMDCPRVRHNITIGTLPFVFVDQNVNLSFHFNCTGVPSFASEIPCLSSPIYKSCVNRVNSEPSNFNWEEFSCDEDVVTTVLDVSGSESRLGTEFIGALWGGFELRWGRNEDCEKCEESGGRCGYNRIMKELLCFCSGGTTSLDHCRGSTQTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G079690`
TK1151 ID	TkA02G079690
OH-1004 ID	LXL04_020183
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	55.400
Protein coverage (%)	TK1151 83.385 / OH-1004 90.476 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G079690

Location Chr02:20730560-20736200 (+)

Description Similar to LRK10L-2.8: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g38260`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1.	No verified direct reference in this release
`At1g67000`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8.	No verified direct reference in this release
`At1g66910`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5.	No verified direct reference in this release
`At1g66930`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7.	No verified direct reference in this release
`At1g66920`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020183 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030247 polysaccharide binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G66930

ath:AT1G67000

ath:AT5G38260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.860

Rank 1 · TkA02G079690 · TK1151

Endoplasmic reticulum0.081

Rank 2 · TkA02G079690 · TK1151

Cytoplasm0.075

Rank 3 · TkA02G079690 · TK1151

Nucleus0.051

Rank 4 · TkA02G079690 · TK1151

Lysosome / Vacuole0.028

Rank 5 · TkA02G079690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind31-99 aa

PF06636DUF115781-101 aa

PF14380WAK_assoc168-245 aa

PF13947GUB_WAK_bind177-192 aa

PF10140YukC271-293 aa

PF06636DUF1157272-333 aa

PF07714PK_Tyr_Ser-Thr334-607 aa

PF00069Pkinase335-606 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G079690	`PF13947`	GUB_WAK_bind	31	99	8.1e-13	49.3
TkA02G079690	`PF06636`	DUF1157	81	101	0.39	10.2
TkA02G079690	`PF14380`	WAK_assoc	168	245	1.7e-14	55.1
TkA02G079690	`PF13947`	GUB_WAK_bind	177	192	8.1e-13	49.3
TkA02G079690	`PF10140`	YukC	271	293	0.23	11.0
TkA02G079690	`PF06636`	DUF1157	272	333	0.39	10.2
TkA02G079690	`PF07714`	PK_Tyr_Ser-Thr	334	607	2.5e-45	155.5
TkA02G079690	`PF00069`	Pkinase	335	606	1.6e-44	153.0
TkA02G079690	`PF03109`	ABC1	340	362	0.0024	17.8
TkA02G079690	`PF03109`	ABC1	447	486	0.0024	17.8
TkA02G079690	`PF17667`	Pkinase_fungal	451	508	0.18	11.2
TkA02G079690	`PF14531`	Kinase-like	453	530	0.071	13.1
TkA02G079690	`PF10140`	YukC	454	480	0.23	11.0
TkA02G079690	`PF13947`	GUB_WAK_bind	547	558	8.1e-13	49.3
TkA02G079690	`PF10140`	YukC	548	579	0.23	11.0
TkA02G079690	`PF14531`	Kinase-like	558	599	0.071	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FF31`	Arabidopsis thaliana	sp\|Q9FF31\|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1	39.700%	Swiss-Prot	Medium
`Q3ECH2`	Arabidopsis thaliana	sp\|Q3ECH2\|LRL28_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8	37.400%	Swiss-Prot	Medium
`F4HQ20`	Arabidopsis thaliana	sp\|F4HQ20\|LRL25_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5	38.200%	Swiss-Prot	Medium
`F4HQ23`	Arabidopsis thaliana	sp\|F4HQ23\|LRL27_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7	38.400%	Swiss-Prot	Medium
`F4HQ22`	Arabidopsis thaliana	sp\|F4HQ22\|LRL24_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.4	36.900%	Swiss-Prot	Medium

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