TkA02G077290 | RubberDandelionOmics

Gene overview

TkA02G077290

Reference: TK1151 Chr: Chr02 Coordinates: 20087516-20109482 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

921 bp · TkA02G077290|TK1151|cDNA

TTGTTGCAACTTAAAAGTTACAACAAGTAACAAGAAAATCGTGAGGCTATGCTTTAATTGTAACTTCAATTAAAACTCTTTAGTAAATGGGCTGGGGCTTACGTGTTCTCCTCTAAGTAAACCCGTTCTACGAATGGCAGCCCAAAACCTCTAAATCTGAGTTCTCTTCCTTCCCACCTCCCTCCCTCTCTCCTTTTCAAACGAGCTTTGTATAATCCTTCAATGGTGTAAACCTGATTTCTGCCTTGAATTAGGGTTAA...

CDS

Download CDS FASTA

1050 bp · TkA02G077290|TK1151|CDS

ATGTCTACATTTGGCGTTGCTTCTGCTTCCAACACGAATCCTAACAAGTCCACTGAGGTTGTATCACCTCCTACTGATGGTGTATCAAGCCTTTGCTTCAGTCCCAAAGCGAATTACCTTGTCGCAACTTCATGGGATAACCAGGTAAGATGTTGGGAGGTAACAAAAAACGGAACTTCAGTCAGCACAGCAGCAAAGACATCAATGGCTCATGAACTTCCGGCTTTATGTTCAACATGGAAAGATGATGGAACAACGGT...

Protein

Download Protein FASTA

349 aa · TkA02G077290|TK1151|PROTEIN

MSTFGVASASNTNPNKSTEVVSPPTDGVSSLCFSPKANYLVATSWDNQVRCWEVTKNGTSVSTAAKTSMAHELPALCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPSTVAMHDGPVTSIAWIPEMSLLVSGSWDKTLRYWDLRQQNPVHTQQLPDRCYGLTVRHPLMVVATADRNLIAFNLQNPQTEFKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDEQQNSKNFTFKCHREGNEVYSVNSLNFHPVHQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G077290`
TK1151 ID	TkA02G077290
OH-1004 ID	LXL04_017062
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G077290

Location Chr02:20087516-20109482 (+)

Description Similar to RAE1: Protein RAE1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80670`	Protein RAE1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017062 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery Biological Process

GO:0006405 RNA export from nucleus Biological Process

GO:0006406 mRNA export from nucleus Biological Process

GO:0006913 nucleocytoplasmic transport Biological Process

GO:0015031 protein transport Biological Process

GO:0051028 mRNA transport Biological Process

GO:0051301 cell division Biological Process

GO:0060236 regulation of mitotic spindle organization Biological Process

GO:0001650 fibrillar center Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005643 nuclear pore Cellular Component

KEGG gene cross-reference

ath:AT1G80670

dre:393973

hsa:8480

pon:100171527

ssc:100125839

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.776

Rank 1 · TkA02G077290 · TK1151

Cytoplasm0.319

Rank 2 · TkA02G077290 · TK1151

Cell membrane0.047

Rank 3 · TkA02G077290 · TK1151

Mitochondrion0.028

Rank 4 · TkA02G077290 · TK1151

Endoplasmic reticulum0.023

Rank 5 · TkA02G077290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23419WD40_RFWD34-92 aa

PF25174Beta-prop_THOC311-87 aa

PF23383Beta-prop_IFT140_1st12-62 aa

PF24807WD40_CDC20-Fz13-152 aa

PF23775Beta-prop_RIG_2nd13-80 aa

PF24814WD40_Prp1915-157 aa

PF24817WD40_WDHD1_1st17-61 aa

PF29630ASA117-62 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G077290	`PF23419`	WD40_RFWD3	4	92	0.013	15.6
TkA02G077290	`PF25174`	Beta-prop_THOC3	11	87	6.2e-36	124.5
TkA02G077290	`PF23383`	Beta-prop_IFT140_1st	12	62	3.6e-05	23.4
TkA02G077290	`PF24807`	WD40_CDC20-Fz	13	152	1.2e-19	71.5
TkA02G077290	`PF23775`	Beta-prop_RIG_2nd	13	80	1.2e-09	38.7
TkA02G077290	`PF24814`	WD40_Prp19	15	157	6.7e-30	104.8
TkA02G077290	`PF24817`	WD40_WDHD1_1st	17	61	3e-29	102.8
TkA02G077290	`PF29630`	ASA1	17	62	3.9e-05	23.4
TkA02G077290	`PF23769`	Beta-prop_WDR75_2nd	17	62	8.3e-05	22.2
TkA02G077290	`PF25175`	Beta-prop_WDR5	19	234	4.4e-30	105.7
TkA02G077290	`PF25173`	Beta-prop_WDR3_1st	19	181	3.3e-29	102.6
TkA02G077290	`PF16755`	Beta-prop_NUP159_NUP214	19	63	0.029	14.4
TkA02G077290	`PF23756`	Beta-prop_HPS5	20	99	7.8e-06	26.1
TkA02G077290	`PF00400`	WD40	23	52	2.2e-28	98.2
TkA02G077290	`PF23409`	Beta-prop_EML	23	162	8.4e-12	45.8
TkA02G077290	`PF23414`	Beta-prop_EML_2	24	106	3.8e-21	76.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38942`	Arabidopsis thaliana	sp\|Q38942\|RAE1_ARATH Protein RAE1	81.100%	Swiss-Prot	High

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