RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G073510
Reference: TK1151 Chr: Chr02 Coordinates: 19008141-19012865 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

459 bp · TkA02G073510|TK1151|cDNA

ATGACAAATCGGTGGCTGAAGAAGACGCTAGCGGTGCAGAGGATATCAGGGAAGTACAGTTCAAGCAATGACGAGATTCCAGGTCGTTTAGAGAAATTGGAGCTAGCCCGAGATGCAATTATATCCGGTCTTCAGATTGATGCTTCAAGCGATGCTCTACGGAATTCAGAAAATATAATTGGGAGGAGAATCCATGGGAGACCTCCACGTACAGATGATTTTGATTGCACACATTGTTTCAAATTACTATATGAACCAAT...

CDS

Download CDS FASTA

459 bp · TkA02G073510|TK1151|CDS

ATGACAAATCGGTGGCTGAAGAAGACGCTAGCGGTGCAGAGGATATCAGGGAAGTACAGTTCAAGCAATGACGAGATTCCAGGTCGTTTAGAGAAATTGGAGCTAGCCCGAGATGCAATTATATCCGGTCTTCAGATTGATGCTTCAAGCGATGCTCTACGGAATTCAGAAAATATAATTGGGAGGAGAATCCATGGGAGACCTCCACGTACAGATGATTTTGATTGCACACATTGTTTCAAATTACTATATGAACCAAT...

Protein

Download Protein FASTA

152 aa · TkA02G073510|TK1151|PROTEIN

MTNRWLKKTLAVQRISGKYSSSNDEIPGRLEKLELARDAIISGLQIDASSDALRNSENIIGRRIHGRPPRTDDFDCTHCFKLLYEPITTPCGHIFWRSCIFQSMDRDYNFLVDEFVIHGSDILQHMCLDACFESHYLKKWNQIIQIIKAKVR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G073510
TK1151 IDTkA02G073510
OH-1004 IDLXL04_031443
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.300
Protein coverage (%)TK1151 50.658 / OH-1004 15.779
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G073510
LocationChr02:19008141-19012865 (-)
DescriptionSimilar to LONRF1: LON peptidase N-terminal domain and RING finger protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0043021 ribonucleoprotein complex binding Molecular Function
GO:0051787 misfolded protein binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
hsa:164832
hsa:91694
mcf:102135813
mmu:244421
mmu:74365
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.499
Rank 1 · TkA02G073510 · TK1151
Cytoplasm0.401
Rank 2 · TkA02G073510 · TK1151
Mitochondrion0.068
Rank 3 · TkA02G073510 · TK1151
Cell membrane0.060
Rank 4 · TkA02G073510 · TK1151
Endoplasmic reticulum0.044
Rank 5 · TkA02G073510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13920zf-C3HC4_374-99 aa
PF23555zf-RING_Vps4174-80 aa
PF14634zf-RING_575-104 aa
PF13639zf-RING_275-106 aa
PF14835zf-RING_675-102 aa
PF15227zf-C3HC4_476-104 aa
PF13923zf-C3HC4_276-106 aa
PF13445zf-RING_UBOX76-102 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G073510PF13920zf-C3HC4_374990.2112.1
TkA02G073510PF23555zf-RING_Vps4174805.77.4
TkA02G073510PF14634zf-RING_5751040.00218.8
TkA02G073510PF13639zf-RING_2751060.004318.0
TkA02G073510PF14835zf-RING_6751020.2412.0
TkA02G073510PF15227zf-C3HC4_4761045.5e-0730.3
TkA02G073510PF13923zf-C3HC4_2761068e-0729.5
TkA02G073510PF13445zf-RING_UBOX761021.5e-0525.6
TkA02G073510PF00097zf-C3HC4761057.4e-0523.3
TkA02G073510PF21363TRAF3_RING761000.04614.1
TkA02G073510PF16685zf-RING_10761030.1213.2
TkA02G073510PF23555zf-RING_Vps41901075.77.4
TkA02G073510PF14835zf-RING_61221340.2412.0
TkA02G073510PF13920zf-C3HC4_31251280.2112.1
TkA02G073510PF13639zf-RING_21261350.004318.0
TkA02G073510PF13923zf-C3HC4_21271328e-0729.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser