LXL04_031443 | RubberDandelionOmics

Gene overview

LXL04_031443

Reference: OH-1004 Chr: Chr07 Coordinates: 6032020-6035355 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1467 bp · LXL04_031443|LXL04_031443|OH1004|cDNA

ATGGCTACCGAAGAGGAGTTATCATCGTCGTCGTTAGGATTGAACTTGGAAGGGATTGACGATGTTGAGGATTTCGTTTGGGAGAATCAAGGAGAGTCGGCATCGATGTCGTTAGGGCGGTTTAGTCATCTTTATGATCTCATGGAAATGGGGAACAAAGCATTCAGAGAGAATCGTTTTGAAGAGGCTGTCAATTGTTACTCAAGAGCGCATAATATTCAACCAACCGACCCTGTAATTCTTAACAACCGATGTGCAGC...

CDS

Download CDS FASTA

1467 bp · LXL04_031443|LXL04_031443|OH1004|CDS

ATGGCTACCGAAGAGGAGTTATCATCGTCGTCGTTAGGATTGAACTTGGAAGGGATTGACGATGTTGAGGATTTCGTTTGGGAGAATCAAGGAGAGTCGGCATCGATGTCGTTAGGGCGGTTTAGTCATCTTTATGATCTCATGGAAATGGGGAACAAAGCATTCAGAGAGAATCGTTTTGAAGAGGCTGTCAATTGTTACTCAAGAGCGCATAATATTCAACCAACCGACCCTGTAATTCTTAACAACCGATGTGCAGC...

Protein

Download Protein FASTA

488 aa · LXL04_031443|LXL04_031443|OH1004|PROTEIN

MATEEELSSSSLGLNLEGIDDVEDFVWENQGESASMSLGRFSHLYDLMEMGNKAFRENRFEEAVNCYSRAHNIQPTDPVILNNRCAAYLRISQFLKNRSPSTSEHKPLSGLDPTIHAGLALKDADHLMNVRRQSVTPYILKTNALILLEKFELARDAIISGLQIDPSSNALRNLENIIGRRIHGRPARTDDFDCTLCLKLLYEPITTPCGHTFCRSCIFQSMDRGNRCPLCRTVLFISPRTCAISVTLNSIIERNFPQEY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031443`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_031443`
Location	Chr07:6032020-6035355 (-)
Description	Similar to LONRF1: LON peptidase N-terminal domain and RING finger protein 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_031443` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0043021 ribonucleoprotein complex binding Molecular Function GO:0051787 misfolded protein binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference	hsa:164832 hsa:91694 mcf:102135813 mmu:244421 mmu:74365 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.501

Rank 1 · LXL04_031443 · OH-1004

Nucleus0.311

Rank 2 · LXL04_031443 · OH-1004

Mitochondrion0.150

Rank 3 · LXL04_031443 · OH-1004

Peroxisome0.136

Rank 4 · LXL04_031443 · OH-1004

Plastid0.069

Rank 5 · LXL04_031443 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13414.13TPR_1151-90 aa

PF13920.13zf-C3HC4_3192-233 aa

PF13639.13zf-RING_2193-232 aa

PF13923.13zf-C3HC4_2194-231 aa

PF00097.32zf-C3HC4194-231 aa

PF13445.13zf-RING_UBOX194-229 aa

PF15227.13zf-C3HC4_4194-231 aa

PF14634.13zf-RING_5194-233 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031443	`PF13414.13`	TPR_11	51	90	2.7e-06	27.7
LXL04_031443	`PF13920.13`	zf-C3HC4_3	192	233	7.9e-08	32.7
LXL04_031443	`PF13639.13`	zf-RING_2	193	232	5.1e-09	37.0
LXL04_031443	`PF13923.13`	zf-C3HC4_2	194	231	4.8e-13	49.4
LXL04_031443	`PF00097.32`	zf-C3HC4	194	231	7.6e-10	39.2
LXL04_031443	`PF13445.13`	zf-RING_UBOX	194	229	1.1e-08	35.6
LXL04_031443	`PF15227.13`	zf-C3HC4_4	194	231	9.7e-08	32.7
LXL04_031443	`PF14634.13`	zf-RING_5	194	233	6.5e-06	26.7
LXL04_031443	`PF02190.23`	LON_substr_bdg	278	466	5.1e-21	76.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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