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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G061890
Reference: TK1151 Chr: Chr02 Coordinates: 16171034-16175029 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2084 bp · TkA02G061890|TK1151|cDNA

TTTTCGACTGATTAAAAATTCTGATTACTTCGACGATAAACTATTACTTTACAATATCATAAAATTTTAGTTCCATTTTTTGATTAAAAAACTAAAACTCAAAAACTGTTTTTTAACTTCAATCCACATGTCTGGTTAAAGAAACATGGTTTTTTGGTTGCTCGGTCTTCTAATCAACATCTCACTCGCTCGCTATTGGTTGCTTACCCACGAAAACCTCTCTTCTTCGTCTCTCTCTCTCTCTCACACACACATACACA...

CDS

Download CDS FASTA

1461 bp · TkA02G061890|TK1151|CDS

ATGGCAATAGATCCAACTTCAGTATCTGAGTCAGCTCCTTCTTGGTTCACTCCCAAAAGGTTGCTTGTGGTATTCTGTGTGATCAACTTGGTAAATTATGTGGACAGAGGTGCAATTGCAACCAATGGTGTAAATGGAAGCCCTAGAATTTGCACAGAGAATAATGTCTGTTCAGATGGTAGTGGAATTCAGGGTGATTTTGACCTAAGCAATTTCAAAGATGGTGTCATATCATCTGCTTTCATGGTTGGACTTCTCAT...

Protein

Download Protein FASTA

486 aa · TkA02G061890|TK1151|PROTEIN

MAIDPTSVSESAPSWFTPKRLLVVFCVINLVNYVDRGAIATNGVNGSPRICTENNVCSDGSGIQGDFDLSNFKDGVISSAFMVGLLIASPIFASLAKSINPFRLIGVGLSVWTLAAAGCGLSVDFWSITICRMLVGVGEASFISLAAPFIDDNAPVAQRTAWLGIFYMCIPTGIAIGYVYGGLVGTSLGWRYAFFGEAILMLPFAILGFVMKPLQMKGMSNSKTIPGSLTEDYSKKDSSFVSHSLNQLSRFEQDINALLH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G061890
TK1151 IDTkA02G061890
OH-1004 IDLXL04_038562
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)74.100
Protein coverage (%)TK1151 95.473 / OH-1004 90.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G061890
LocationChr02:16171034-16175029 (+)
DescriptionSimilar to At5g64500: Probable sphingolipid transporter spinster homolog 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64500 Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. No verified direct reference in this release
At2g22730 Probable sphingolipid transporter. No verified direct reference in this release
At5g65687 Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038562 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006869 lipid transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0031902 late endosome membrane Cellular Component
GO:0022857 transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT2G22730
ath:AT5G64500
ath:AT5G65687
xla:495202
xtr:100127684
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.468
Rank 1 · TkA02G061890 · TK1151
Cytoplasm0.224
Rank 2 · TkA02G061890 · TK1151
Golgi apparatus0.215
Rank 3 · TkA02G061890 · TK1151
Endoplasmic reticulum0.141
Rank 4 · TkA02G061890 · TK1151
Cell membrane0.131
Rank 5 · TkA02G061890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_163-398 aa
PF03137OATP63-116 aa
PF00083Sugar_tr70-399 aa
PF06779MFS_470-181 aa
PF05977MFS_375-238 aa
PF03137OATP127-350 aa
PF16983MFS_MOT1161-194 aa
PF16983MFS_MOT1287-331 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G061890PF07690MFS_1633983.6e-32112.4
TkA02G061890PF03137OATP631161.1e-2590.7
TkA02G061890PF00083Sugar_tr703997.2e-0522.6
TkA02G061890PF06779MFS_4701810.002218.1
TkA02G061890PF05977MFS_3752380.0001720.9
TkA02G061890PF03137OATP1273501.1e-2590.7
TkA02G061890PF16983MFS_MOT11611940.7410.9
TkA02G061890PF16983MFS_MOT12873310.7410.9
TkA02G061890PF05977MFS_33054560.0001720.9
TkA02G061890PF11511RhodobacterPufX3483689.86.7
TkA02G061890PF03137OATP3504181.1e-2590.7
TkA02G061890PF16983MFS_MOT13834460.7410.9
TkA02G061890PF07690MFS_13974453.6e-32112.4
TkA02G061890PF11511RhodobacterPufX4264519.86.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FLG8Arabidopsis thalianasp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 269.500%Swiss-ProtHigh
F4IKF6Arabidopsis thalianasp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 364.000%Swiss-ProtHigh
Q6NMN6Arabidopsis thalianasp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 159.900%Swiss-ProtHigh

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