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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G056570
Reference: TK1151 Chr: Chr02 Coordinates: 14750949-14752532 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1392 bp · TkA02G056570|TK1151|cDNA

ATGGTCACTACATCAGATTTCTGCCAAAGGATCAAACAACCAAACCCATCCTCTATCTTGTATTCATCCATTAGAGATCACATCTCCAATGGTACACCTAAAGAAGCCCTTTTAATTTACACCCAAAATCGTCGAAACCCGCTTAATCTACTGAGTCTACTCCCTTTGGTTTTCAAAGCTTGTGCATTTCTTTCCCTCACTAACTATGGAAAGTCGCTTCATTCTGAATCAATCAAAGTTGGGCTGCAGTCTGATGTAGT...

CDS

Download CDS FASTA

1392 bp · TkA02G056570|TK1151|CDS

ATGGTCACTACATCAGATTTCTGCCAAAGGATCAAACAACCAAACCCATCCTCTATCTTGTATTCATCCATTAGAGATCACATCTCCAATGGTACACCTAAAGAAGCCCTTTTAATTTACACCCAAAATCGTCGAAACCCGCTTAATCTACTGAGTCTACTCCCTTTGGTTTTCAAAGCTTGTGCATTTCTTTCCCTCACTAACTATGGAAAGTCGCTTCATTCTGAATCAATCAAAGTTGGGCTGCAGTCTGATGTAGT...

Protein

Download Protein FASTA

463 aa · TkA02G056570|TK1151|PROTEIN

MVTTSDFCQRIKQPNPSSILYSSIRDHISNGTPKEALLIYTQNRRNPLNLLSLLPLVFKACAFLSLTNYGKSLHSESIKVGLQSDVVVGTSIVNMYGKCCNIIDARKVFDEMPVKNVVTWNAMINGYTRNGEMKAAKDVFDAMPERNLYVWSSMISGYFKNGDVESGEAIFNRIPFRNLVNWNSLISGYSQNGLCEKALEAFSKMESDGFEPDQISFASALSACAQLGLLKTGKDLHKMIIQKRLKLNIFVSNSLVDMYA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G056570
TK1151 IDTkA02G056570
OH-1004 IDLXL04_017307
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)78.800
Protein coverage (%)TK1151 94.384 / OH-1004 91.758
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G056570
LocationChr02:14750949-14752532 (-)
DescriptionSimilar to PCMP-E29: Pentatricopeptide repeat-containing protein At3g21470
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At3g11460 Involved in C-to-U editing of mitochondrial RNA.
MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.2013 · DOI: 10.1007/s11103-012-0003-2

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017307 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005773 vacuole Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G45350
ath:AT3G21470
ath:AT3G29230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.627
Rank 1 · TkA02G056570 · TK1151
Plastid0.178
Rank 2 · TkA02G056570 · TK1151
Nucleus0.058
Rank 3 · TkA02G056570 · TK1151
Cytoplasm0.032
Rank 4 · TkA02G056570 · TK1151
Cell membrane0.005
Rank 5 · TkA02G056570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13428TPR_1426-40 aa
PF17049AEP168-127 aa
PF13812PPR_379-112 aa
PF12854PPR_181-112 aa
PF13041PPR_285-117 aa
PF30136MSC6_C85-141 aa
PF01535PPR90-116 aa
PF29070MSC6_N91-156 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G056570PF13428TPR_1426400.0004921.2
TkA02G056570PF17049AEP1681270.1511.8
TkA02G056570PF13812PPR_3791123.6e-2794.9
TkA02G056570PF12854PPR_1811126.9e-44148.0
TkA02G056570PF13041PPR_2851175.3e-53177.6
TkA02G056570PF30136MSC6_C851410.2311.5
TkA02G056570PF01535PPR901165.2e-64208.8
TkA02G056570PF29070MSC6_N911563.2e-0730.5
TkA02G056570PF10175MPP6921130.03115.4
TkA02G056570PF24760TPR_IF140_C981430.05314.6
TkA02G056570PF22330Rib_mS39_PPR1051290.2411.8
TkA02G056570PF24603TPR_301131420.212.8
TkA02G056570PF13041PPR_21151485.3e-53177.6
TkA02G056570PF12854PPR_11161436.9e-44148.0
TkA02G056570PF13812PPR_31161453.6e-2794.9
TkA02G056570PF01535PPR1181475.2e-64208.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914235.100%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic32.700%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054040.200%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631036.200%Swiss-ProtMedium
Q9CAY1Arabidopsis thalianasp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial32.500%Swiss-ProtMedium

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