TkA02G044800 | RubberDandelionOmics

Gene overview

TkA02G044800

Reference: TK1151 Chr: Chr02 Coordinates: 11558983-11560508 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

965 bp · TkA02G044800|TK1151|cDNA

GAAGTTATATGGGCCGTCTATTTATATGGGCTAATGACCAATGGACTTCAAAAGTTATAGGCAACAAGAAAAGTACAATTTGTCAAGCATTAATCACAATCGATCATCAACACATTGACGCCAAAGATCGTCAAATCGCCGGAAAAACGAAACATCGACAATCTCCGCCACGCACCTACCTGAATACAGAAACGGAAATGGCAAGAGAAGTATCGGAAAGCTGTATGGATAGTTTGCTAACCGAGATAGTTTCTTCGTAT...

CDS

Download CDS FASTA

696 bp · TkA02G044800|TK1151|CDS

ATGGGCCGTCTATTTATATGGGCTAATGACCAATGGACTTCAAAAGTTATAGGCAACAAGAAAAGTACAATTTGTCAAGCATTAATCACAATCGATCATCAACACATTGACGCCAAAGATCGTCAAATCGCCGGAAAAACGAAACATCGACAATCTCCGCCACGCACCTACCTGAATACAGAAACGGAAATGGCAAGAGAAGTATCGGAAAGCTGTATGGATAGTTTGCTAACCGAGATAGTTTCTTCGTATACCAATGT...

Protein

Download Protein FASTA

231 aa · TkA02G044800|TK1151|PROTEIN

MGRLFIWANDQWTSKVIGNKKSTICQALITIDHQHIDAKDRQIAGKTKHRQSPPRTYLNTETEMAREVSESCMDSLLTEIVSSYTNVLYASKPELAARRIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDDKFAWVSRMSSTDNSTSTQEPGNKTSEASSMHLYFPCGIIRGALSNLGISCAVSADISNLPACSFVIRIKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G044800`
TK1151 ID	TkA02G044800
OH-1004 ID	LXL04_017428
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 90.588 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA02G044800`
Location	Chr02:11558983-11560508 (+)
Description	Similar to TRAPPC6B: Trafficking protein particle complex subunit 6B
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_017428` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0006901 vesicle coating Biological Process GO:0048208 COPII vesicle coating Biological Process GO:0099022 vesicle tethering Biological Process GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005801 cis-Golgi network Cellular Component GO:0005802 trans-Golgi network Cellular Component GO:0005829 cytosol Cellular Component GO:0030008 TRAPP complex Cellular Component
KEGG gene cross-reference	bta:521470 dre:450008 hsa:122553 mmu:67091 mmu:78232 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.525

Rank 1 · TkA02G044800 · TK1151

Nucleus0.331

Rank 2 · TkA02G044800 · TK1151

Mitochondrion0.095

Rank 3 · TkA02G044800 · TK1151

Peroxisome0.076

Rank 4 · TkA02G044800 · TK1151

Golgi apparatus0.058

Rank 5 · TkA02G044800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04823Herpes_UL49_28-56 aa

PF06723MreB_Mbl16-98 aa

PF04051TRAPP74-230 aa

PF04823Herpes_UL49_2115-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G044800	`PF04823`	Herpes_UL49_2	8	56	0.21	12.4
TkA02G044800	`PF06723`	MreB_Mbl	16	98	0.3	10.6
TkA02G044800	`PF04051`	TRAPP	74	230	4.3e-41	140.9
TkA02G044800	`PF04823`	Herpes_UL49_2	115	128	0.21	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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