TkA02G043060 | RubberDandelionOmics

Gene overview

TkA02G043060

Reference: TK1151 Chr: Chr02 Coordinates: 10951859-10955326 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1616 bp · TkA02G043060|TK1151|cDNA

AAACAAACGAGCTTAAACAAGTGAAACAACCCTCTGTTTTGGGGGTTCATAACAGTTAACCGGAGTTAATTAATAAACCCTTCCTCCGCCACCATTCCATCTTCTCTACTGAAGTTGGAAGCTCCCCGACGTAAGAAGTTAAATTTTAATCTGTTAATCCCAAGGCAGCTTTCAAACGTTTCTATATGTTTTCCCAATCCACATTTTAGTAAAATAGAGTTAATGAGTTCGATGGCTGCTCTAAGTTCAATATTCATCCA...

CDS

Download CDS FASTA

1176 bp · TkA02G043060|TK1151|CDS

ATGAGTTCGATGGCTGCTCTAAGTTCAATATTCATCCATGGAGGGTGCTTTTCTAGGTTTCAGGATGAATCCAAATCTCTAAAAATGAGGAAAATGGCCACAAGGTTCTCAGTGGTATCATCAGCTCAGAAATCAAATAAGTCCATTAAAGTTGGTATTCTTGGAGCTAGTGGTTATACTGGTGCAGAGCTTATTAGATTCCTTGCAAACCATCCTTACTTTGACATTTCACTAATGACTGCTGATAGAAAAGCCGGTCA...

Protein

Download Protein FASTA

391 aa · TkA02G043060|TK1151|PROTEIN

MSSMAALSSIFIHGGCFSRFQDESKSLKMRKMATRFSVVSSAQKSNKSIKVGILGASGYTGAELIRFLANHPYFDISLMTADRKAGQSIGSVFPHLITQNLPDLVAVKDADFSSVDAVFCCLPHGTTQEIIKGLPSSLKIVDLSADFRLRDINDYAEWYGQPHKATELQKEAVYGLTEIYRNKIQNARLVANPGCYPTTVLLPLVPLMKANLITYENIVIVSNSGVSGAGRSAKEANLYTEISEGIFSYGITRHRHVPEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G043060`
TK1151 ID	TkA02G043060
OH-1004 ID	LXL04_017447
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G043060

Location Chr02:10951859-10955326 (+)

Description Similar to At2g19940: Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g19940`	Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0617900`	Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017447 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006526 L-arginine biosynthetic process Biological Process

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity Molecular Function

GO:0005507 copper ion binding Molecular Function

GO:0051287 NAD binding Molecular Function

GO:0070401 NADP+ binding Molecular Function

KEGG gene cross-reference

ath:AT2G19940

dosa:Os03g0617900

oca:OCAR_6010

ocg:OCA5_c20150

rcp:RCAP_rcc00553

rru:Rru_A2421

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.957

Rank 1 · TkA02G043060 · TK1151

Mitochondrion0.083

Rank 2 · TkA02G043060 · TK1151

Cytoplasm0.053

Rank 3 · TkA02G043060 · TK1151

Peroxisome0.034

Rank 4 · TkA02G043060 · TK1151

Nucleus0.019

Rank 5 · TkA02G043060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01113DapB_N49-117 aa

PF22698Semialdhyde_dhC_150-62 aa

PF01118Semialdhyde_dh50-187 aa

PF05368NmrA50-132 aa

PF01370Epimerase53-121 aa

PF22698Semialdhyde_dhC_1195-359 aa

PF02774Semialdhyde_dhC204-362 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G043060	`PF01113`	DapB_N	49	117	0.027	15.3
TkA02G043060	`PF22698`	Semialdhyde_dhC_1	50	62	7.9e-57	192.4
TkA02G043060	`PF01118`	Semialdhyde_dh	50	187	2.8e-29	102.7
TkA02G043060	`PF05368`	NmrA	50	132	0.14	12.4
TkA02G043060	`PF01370`	Epimerase	53	121	0.28	11.3
TkA02G043060	`PF22698`	Semialdhyde_dhC_1	195	359	7.9e-57	192.4
TkA02G043060	`PF02774`	Semialdhyde_dhC	204	362	5.7e-21	76.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93Z70`	Arabidopsis thaliana	sp\|Q93Z70\|ARGC_ARATH Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic	73.600%	Swiss-Prot	High
`Q6AV34`	Oryza sativa subsp. japonica	sp\|Q6AV34\|ARGC_ORYSJ Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic	72.600%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card