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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G042850
Reference: TK1151 Chr: Chr02 Coordinates: 10855763-10872153 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

11260 bp · TkA02G042850|TK1151|cDNA

TAAAAAACTAAAAATCGGAAAGATATGGGGGGACATTTGCAATTTCTGAAACCTTTTCACCCTGCTGTTCTTCCGCCATGAGTTCATCATTCTCATTGCTAAATTCAAACACACAAACCAGAGAAATCAAGAGGGGAGATGCGAATTGAAGGTAAACATGAATATGCAAAGCCTTCATCATCAACAACAGCAGTTGGCAGCTCTGCTCTCCGTCGCTCTCCCCAAAGACAAAGATTCATCTTCATCCTCTTCGCAACACA...

CDS

Download CDS FASTA

8520 bp · TkA02G042850|TK1151|CDS

ATGAATATGCAAAGCCTTCATCATCAACAACAGCAGTTGGCAGCTCTGCTCTCCGTCGCTCTCCCCAAAGACAAAGATTCATCTTCATCCTCTTCGCAACACAACAATCCATCGTCTGAAGCTGGAGAGGATGACGCTTCTCGATTGGCAGCCATCAACTCACTTCACCGCGCCATTCTGTACCCTCATAACTCACTCCTCGTCACTCACTCTGCCTCGTTTCTCGCTCAGGGATTTTCGCAACTCCTCGCAGACAAATC...

Protein

Download Protein FASTA

2839 aa · TkA02G042850|TK1151|PROTEIN

MNMQSLHHQQQQLAALLSVALPKDKDSSSSSSQHNNPSSEAGEDDASRLAAINSLHRAILYPHNSLLVTHSASFLAQGFSQLLADKSYSVRQAAATAYGALCAVLCSLPSGPNGRQNHVILGNLVDRFIGWALPLFSNVNAGDGTVEIAAEGLHELLNVADIVATDRYALPILKACQDLLEDERTSLSLLHRLLTILTLISLKFFICFQAHFVDIVDLLLGWAMIPDLAESDRSVIMDSFLQFQKHWVNNLQFSLGLLSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G042850
TK1151 IDTkA02G042850
OH-1004 IDLXL04_017454
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.900
Protein coverage (%)TK1151 99.718 / OH-1004 78.792
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G042850
LocationChr02:10855763-10872153 (-)
DescriptionSimilar to Smg1: Serine/threonine-protein kinase SMG1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017454 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process
GO:0006281 DNA repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0018105 peptidyl-serine phosphorylation Biological Process
GO:0032204 regulation of telomere maintenance Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0033391 chromatoid body Cellular Component
GO:1902554 serine/threonine protein kinase complex Cellular Component
KEGG gene cross-reference
dre:569810
mmu:233789
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.486
Rank 1 · TkA02G042850 · TK1151
Cytoplasm0.461
Rank 2 · TkA02G042850 · TK1151
Golgi apparatus0.071
Rank 3 · TkA02G042850 · TK1151
Endoplasmic reticulum0.055
Rank 4 · TkA02G042850 · TK1151
Mitochondrion0.051
Rank 5 · TkA02G042850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02985HEAT79-104 aa
PF15785SMG1580-1145 aa
PF02985HEAT645-668 aa
PF02985HEAT684-704 aa
PF07719TPR_21049-1070 aa
PF00515TPR_11049-1066 aa
PF23593HEAT_ATR1626-1706 aa
PF02985HEAT1645-1662 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G042850PF02985HEAT791042.2e-0628.1
TkA02G042850PF15785SMG158011457.4e-37127.7
TkA02G042850PF02985HEAT6456682.2e-0628.1
TkA02G042850PF02985HEAT6847042.2e-0628.1
TkA02G042850PF07719TPR_2104910700.03514.9
TkA02G042850PF00515TPR_1104910660.3411.5
TkA02G042850PF23593HEAT_ATR162617060.002718.3
TkA02G042850PF02985HEAT164516622.2e-0628.1
TkA02G042850PF08771FRB_dom172117420.00120.0
TkA02G042850PF08771FRB_dom178318450.00120.0
TkA02G042850PF00454PI3_PI4_kinase191221732.5e-50172.4
TkA02G042850PF23593HEAT_ATR202420450.002718.3
TkA02G042850PF10280Med11221222640.3612.0
TkA02G042850PF08771FRB_dom226622900.00120.0
TkA02G042850PF00454PI3_PI4_kinase239224802.5e-50172.4
TkA02G042850PF10280Med11271127610.3612.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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