TkA02G042350 | RubberDandelionOmics

Gene overview

TkA02G042350

Reference: TK1151 Chr: Chr02 Coordinates: 10675349-10675871 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

417 bp · TkA02G042350|TK1151|cDNA

ATGGCCTTAGCCACTACCCTCTTCTATGCTTTCTTGGTTCTTCAGCTCTCTCTTGGAAGCAATGCTCGCCAAATCATCGAGCCTAAAGAAACTCAAGGATTAGACCCTGCTCTAAACGTGTTTTTCAGAGTGAATGATCTCTACCGTGGCAAAAAGATGCCAATTTATTTGGTCACAAATGACAATTCCACCCGTACTCATCTACTCTCTCGAGATGAAGCTGATTTAATCCCTTTTTCGTCACTGAAACTCCCTTACCT...

CDS

Download CDS FASTA

417 bp · TkA02G042350|TK1151|CDS

ATGGCCTTAGCCACTACCCTCTTCTATGCTTTCTTGGTTCTTCAGCTCTCTCTTGGAAGCAATGCTCGCCAAATCATCGAGCCTAAAGAAACTCAAGGATTAGACCCTGCTCTAAACGTGTTTTTCAGAGTGAATGATCTCTACCGTGGCAAAAAGATGCCAATTTATTTGGTCACAAATGACAATTCCACCCGTACTCATCTACTCTCTCGAGATGAAGCTGATTTAATCCCTTTTTCGTCACTGAAACTCCCTTACCT...

Protein

Download Protein FASTA

138 aa · TkA02G042350|TK1151|PROTEIN

MALATTLFYAFLVLQLSLGSNARQIIEPKETQGLDPALNVFFRVNDLYRGKKMPIYLVTNDNSTRTHLLSRDEADLIPFSSLKLPYLLKIFSFSNESPQDKAMETTLKQCEFKPKKGEIKFCATSLESMLERHVAFWV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G042350`
TK1151 ID	TkA02G042350
OH-1004 ID	LXL04_038289
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	52.700
Protein coverage (%)	TK1151 90.580 / OH-1004 47.955 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G042350

Location Chr02:10675349-10675871 (+)

Description Similar to USPL1: BURP domain protein USPL1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g49320`	Associated with the protein storage vacuole formation.	The BURP domain protein AtUSPL1 of Arabidopsis thaliana is destined to the protein storage vacuoles and overexpression of the cognate gene distorts seed development.2009 · DOI: 10.1007/s11103-009-9526-6
`At5g25610`	Acts to suppress chlorophyll degradation under moisture stress.	AtRD22 and AtUSPL1, members of the plant-specific BURP domain family involved in Arabidopsis thaliana drought tolerance.2014 · DOI: 10.1371/journal.pone.0110065

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0496800`	Required for pollen development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038289 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0048316 seed development Biological Process

GO:0000326 protein storage vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005795 Golgi stack Cellular Component

KEGG gene cross-reference

ath:AT1G49320

bna:106419576

bna:106439079

dosa:Os01g0733500

dosa:Os11g0170900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.221

Rank 1 · TkA02G042350 · TK1151

Endoplasmic reticulum0.194

Rank 2 · TkA02G042350 · TK1151

Cytoplasm0.145

Rank 3 · TkA02G042350 · TK1151

Cell membrane0.111

Rank 4 · TkA02G042350 · TK1151

Nucleus0.106

Rank 5 · TkA02G042350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03181BURP40-133 aa

PF17151CHASE747-93 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G042350	`PF03181`	BURP	40	133	2.9e-26	93.1
TkA02G042350	`PF17151`	CHASE7	47	93	0.0096	16.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9XI99`	Arabidopsis thaliana	sp\|Q9XI99\|USPL1_ARATH BURP domain protein USPL1	42.600%	Swiss-Prot	Medium
`Q08298`	Arabidopsis thaliana	sp\|Q08298\|RD22_ARATH BURP domain protein RD22	41.300%	Swiss-Prot	Medium
`Q7F8U7`	Oryza sativa subsp. japonica	sp\|Q7F8U7\|BURPD_ORYSJ BURP domain-containing protein 13	35.000%	Swiss-Prot	Medium

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