TkA02G037120 | RubberDandelionOmics

Gene overview

TkA02G037120

Reference: TK1151 Chr: Chr02 Coordinates: 9315759-9320365 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3028 bp · TkA02G037120|TK1151|cDNA

GTAAATTTTCAGCTCTGGAACTAAGCTAACAGAAAATAATAAAAAATAAAAAGAAATTGAGTATCCAGTAGATATTGCAGCAACTGAGACCTTTCAATCTTTTTCATCGCCATGCTCAAAAAAAGAAAAATGGAGGTGAGGCTGAATTCTAGAGAGAGAAACTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTTTAAGGGAGGTTTTTAATTTAGGTCTACCAACTGGTTGTTAGGGATTATACTCCTTAACC...

CDS

Download CDS FASTA

1794 bp · TkA02G037120|TK1151|CDS

ATGTCAACTTACATACCAAGTTCAGAAAATGCAAGAGATTCCGCTCCAATGCTCTACTTAAGAGAGCCTCTACATGATTCATACACATCGGAATCACAAATTCTAGCCGGAAATGTCATGATGTACATGAACTATTCATCCGCTTCCACCGGAGAGTTTTCCGGTACACTGGCCGGAGTCCCCCACCAACCCAACACCTCCATCGACACTCCCAACATCGGAGTCCACGATTCCAACGTTGTCTCACATCAAGAATTCCT...

Protein

Download Protein FASTA

597 aa · TkA02G037120|TK1151|PROTEIN

MSTYIPSSENARDSAPMLYLREPLHDSYTSESQILAGNVMMYMNYSSASTGEFSGTLAGVPHQPNTSIDTPNIGVHDSNVVSHQEFLSSMGESWRDGRNHEMMLMDQMSSRNMQSQGQGQGQALSLSLGSHIPPTGIQFHSGDYRNPNVFFRPESSSFHGNNLNTIKTDGSPYGIGNVSRGITDSKYLKSAQQLLDEIVNVGKALKQKNKESTDDSKGIDDESINIISPNQEPNELSVHEKQELQNKTTKLISMLDEVDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G037120`
TK1151 ID	TkA02G037120
OH-1004 ID	LXL04_017517
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G037120

Location Chr02:9315759-9320365 (+)

Description Similar to BLH7: BEL1-like homeodomain protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release
`At1g75410`	Transcription factor involved in the nuclear import of SHOOT MERISTEMLESS (STM).	No verified direct reference in this release
`At1g19700`	BEL1-like homeodomain protein 10.	No verified direct reference in this release
`At2g35940`	BEL1-like homeodomain protein 1.	No verified direct reference in this release
`At4g34610`	BEL1-like homeodomain protein 6.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017517 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0010201 response to continuous far red light stimulus by the high-irradiance response system Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT1G75410

ath:AT2G16400

ath:AT2G35940

ath:AT4G34610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · TkA02G037120 · TK1151

Cytoplasm0.087

Rank 2 · TkA02G037120 · TK1151

Cell membrane0.026

Rank 3 · TkA02G037120 · TK1151

Endoplasmic reticulum0.015

Rank 4 · TkA02G037120 · TK1151

Plastid0.012

Rank 5 · TkA02G037120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526POX182-307 aa

PF05920Homeobox_KN239-248 aa

PF05920Homeobox_KN376-415 aa

PF00046Homeodomain383-415 aa

PF07526POX438-474 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G037120	`PF07526`	POX	182	307	2e-48	165.0
TkA02G037120	`PF05920`	Homeobox_KN	239	248	3.2e-19	69.2
TkA02G037120	`PF05920`	Homeobox_KN	376	415	3.2e-19	69.2
TkA02G037120	`PF00046`	Homeodomain	383	415	7.2e-07	29.7
TkA02G037120	`PF07526`	POX	438	474	2e-48	165.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIW1`	Arabidopsis thaliana	sp\|Q9SIW1\|BLH7_ARATH BEL1-like homeodomain protein 7	52.600%	Swiss-Prot	High
`Q9FWS9`	Arabidopsis thaliana	sp\|Q9FWS9\|BLH3_ARATH BEL1-like homeodomain protein 3	62.500%	Swiss-Prot	Low
`Q9FXG8`	Arabidopsis thaliana	sp\|Q9FXG8\|BLH10_ARATH BEL1-like homeodomain protein 10	59.300%	Swiss-Prot	Low
`Q9SJ56`	Arabidopsis thaliana	sp\|Q9SJ56\|BLH1_ARATH BEL1-like homeodomain protein 1	58.000%	Swiss-Prot	Low
`O65685`	Arabidopsis thaliana	sp\|O65685\|BLH6_ARATH BEL1-like homeodomain protein 6	46.300%	Swiss-Prot	Medium

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