LXL04_017517 | RubberDandelionOmics

Gene overview

LXL04_017517

Reference: OH-1004 Chr: Chr03 Coordinates: 152359724-152361696 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1788 bp · LXL04_017517|LXL04_017517|OH1004|cDNA

ATGTCGACTTACATACCAAGTTCAGAAAATGCAAGAGATTCCGCTCCAATGCTCTACTTAAGAGAGCCTCTACATGATTCATACACATCGGAATCACCAATTCTAGCCGGAAATGTCATGATGTACATGAACTATTCATCCGCTTCCACCGGAGAGTTTTCCGGTACACTGGCCGGAGTCCCCCACCAACCCAACACCTCCATTGACACTCCCAACATCGGAGTCCACGATTCCAACGTTGTCTCACATCAAGAATTCCT...

CDS

Download CDS FASTA

1788 bp · LXL04_017517|LXL04_017517|OH1004|CDS

ATGTCGACTTACATACCAAGTTCAGAAAATGCAAGAGATTCCGCTCCAATGCTCTACTTAAGAGAGCCTCTACATGATTCATACACATCGGAATCACCAATTCTAGCCGGAAATGTCATGATGTACATGAACTATTCATCCGCTTCCACCGGAGAGTTTTCCGGTACACTGGCCGGAGTCCCCCACCAACCCAACACCTCCATTGACACTCCCAACATCGGAGTCCACGATTCCAACGTTGTCTCACATCAAGAATTCCT...

Protein

Download Protein FASTA

595 aa · LXL04_017517|LXL04_017517|OH1004|PROTEIN

MSTYIPSSENARDSAPMLYLREPLHDSYTSESPILAGNVMMYMNYSSASTGEFSGTLAGVPHQPNTSIDTPNIGVHDSNVVSHQEFLSSMGESWRDGRNHEMMLMDQMSSRNMQSQGQGQGQALSLSLGSHIPPTGIQFHSGDYRNPNVFFRPESSSFHGNNLNTIKTDGSPYGIGNVSRGITDSKYLKSAQQLLDEIVNVGKALKQKSKESTDNSKGIDDESINIISPNQEPNELSVHEKQDLQNKTTKLISMLDEVDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017517`
TK1151 ID	TkA02G037120
OH-1004 ID	LXL04_017517
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_017517

Location Chr03:152359724-152361696 (-)

Description Similar to BLH7: BEL1-like homeodomain protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release
`At4g34610`	BEL1-like homeodomain protein 6.	No verified direct reference in this release
`At1g19700`	BEL1-like homeodomain protein 10.	No verified direct reference in this release
`At1g75410`	Transcription factor involved in the nuclear import of SHOOT MERISTEMLESS (STM).	No verified direct reference in this release
`At2g35940`	BEL1-like homeodomain protein 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017517 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0010201 response to continuous far red light stimulus by the high-irradiance response system Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT1G75410

ath:AT2G16400

ath:AT2G35940

ath:AT4G34610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · LXL04_017517 · OH-1004

Cytoplasm0.088

Rank 2 · LXL04_017517 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_017517 · OH-1004

Endoplasmic reticulum0.015

Rank 4 · LXL04_017517 · OH-1004

Plastid0.012

Rank 5 · LXL04_017517 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526.17POX182-307 aa

PF05920.18Homeobox_KN376-415 aa

PF00046.36Homeodomain383-415 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017517	`PF07526.17`	POX	182	307	6.6e-48	163.4
LXL04_017517	`PF05920.18`	Homeobox_KN	376	415	1.5e-19	70.3
LXL04_017517	`PF00046.36`	Homeodomain	383	415	7.5e-07	29.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIW1`	Arabidopsis thaliana	BEL1-like homeodomain protein 7	52.968%	Swiss-Prot	strong database homology
`O65685`	Arabidopsis thaliana	BEL1-like homeodomain protein 6	50.400%	Swiss-Prot	strong database homology
`Q9FXG8`	Arabidopsis thaliana	BEL1-like homeodomain protein 10	48.889%	Swiss-Prot	moderate database homology
`Q9FWS9`	Arabidopsis thaliana	BEL1-like homeodomain protein 3	60.311%	Swiss-Prot	weak database homology
`Q9SJ56`	Arabidopsis thaliana	BEL1-like homeodomain protein 1	44.875%	Swiss-Prot	moderate database homology

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