RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G020800
Reference: TK1151 Chr: Chr02 Coordinates: 4921390-4923056 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

711 bp · TkA02G020800|TK1151|cDNA

ACCTACTCATCGCAATCGATTCCTTCTGCATCTCTGAAAGTCGCCAGTCGCCTCACTCCCCTCCTGTTGCTCCTTGCCGTCTCCCTTTCCTGTGACGCCGGCGATCGCTCCACCGGAAAAGCGAACCTCAGTCGGCGGTCTTCCTATCGCCGTCTGATCTGCTTGCTGTTTCCCTCTTCAGTCTCCGAATCTTCCTTTTCTGTCGCCATCTGCTCCAAGAGAGATGTTTTGGAACTCGAAGAGGCCATTAAAATCAAAGA...

CDS

Download CDS FASTA

711 bp · TkA02G020800|TK1151|CDS

ACCTACTCATCGCAATCGATTCCTTCTGCATCTCTGAAAGTCGCCAGTCGCCTCACTCCCCTCCTGTTGCTCCTTGCCGTCTCCCTTTCCTGTGACGCCGGCGATCGCTCCACCGGAAAAGCGAACCTCAGTCGGCGGTCTTCCTATCGCCGTCTGATCTGCTTGCTGTTTCCCTCTTCAGTCTCCGAATCTTCCTTTTCTGTCGCCATCTGCTCCAAGAGAGATGTTTTGGAACTCGAAGAGGCCATTAAAATCAAAGA...

Protein

Download Protein FASTA

236 aa · TkA02G020800|TK1151|PROTEIN

TYSSQSIPSASLKVASRLTPLLLLLAVSLSCDAGDRSTGKANLSRRSSYRRLICLLFPSSVSESSFSVAICSKRDVLELEEAIKIKDGEAESYISEIETIGQAYEDMQTQNQHLLQQVMERDDYNIKLVSESVKMKQTHTALISEKQILDKQLQQVNSAFESLKSRIAHSEEQMNACVTQALKSTAEDRHLAVNLENTKGELSNADKELKSLKSLLSSSEKNTIKSVEKWKKFKRN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G020800
TK1151 IDTkA02G020800
OH-1004 IDLXL04_017623
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 77.542 / OH-1004 65.125
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G020800
LocationChr02:4921390-4923056 (-)
DescriptionSimilar to HUB2: E3 ubiquitin-protein ligase BRE1-like 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: Q9C895 E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. No verified direct reference in this release
UniProt: Q8RXD6 E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2ZAC2 E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. No verified direct reference in this release
Os10g0565600 E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1.
Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.2015 · DOI: 10.1104/pp.114.256578
Flowering-Related RING Protein 1 (FRRP1) Regulates Flowering Time and Yield Potential by Affecting Histone H2B Monoubiquitination in Rice (Oryza Sativa).2016 · DOI: 10.1371/journal.pone.0150458
UniProt: A2XW69 E3 ubiquitin-protein ligase that monoubiquitinates H2B to form H2BK143ub1. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017623 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006325 chromatin organization Biological Process
GO:0006513 protein monoubiquitination Biological Process
GO:0009908 flower development Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0010162 seed dormancy process Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0010389 regulation of G2/M transition of mitotic cell cycle Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0045087 innate immune response Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051301 cell division Biological Process
GO:0051781 positive regulation of cell division Biological Process
KEGG gene cross-reference
ath:AT1G55250
ath:AT2G44950
dosa:Os10g0565600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.363
Rank 1 · TkA02G020800 · TK1151
Nucleus0.269
Rank 2 · TkA02G020800 · TK1151
Mitochondrion0.132
Rank 3 · TkA02G020800 · TK1151
Endoplasmic reticulum0.126
Rank 4 · TkA02G020800 · TK1151
Cell membrane0.103
Rank 5 · TkA02G020800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22050Toddler15-55 aa
PF20147Crinkler52-87 aa
PF26095CC_Bre166-119 aa
PF25994HH_AprE72-120 aa
PF28422CCDC8973-228 aa
PF10805DUF273073-117 aa
PF30029REF2_N74-130 aa
PF10146zf-C4H274-117 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G020800PF22050Toddler15550.1712.9
TkA02G020800PF20147Crinkler52872.39.7
TkA02G020800PF26095CC_Bre1661190.9610.5
TkA02G020800PF25994HH_AprE721200.06114.1
TkA02G020800PF28422CCDC89732280.002917.7
TkA02G020800PF10805DUF2730731170.312.1
TkA02G020800PF30029REF2_N741300.6711.1
TkA02G020800PF10146zf-C4H2741176.97.8
TkA02G020800PF10473CENP-F_leu_zip751740.4611.3
TkA02G020800PF24161CCDC39782320.0004918.8
TkA02G020800PF27583BEGAIN_coil781150.9810.6
TkA02G020800PF30842LEKR1781754.98.2
TkA02G020800PF18504Csm1_N791130.4311.7
TkA02G020800PF02403Seryl_tRNA_N821170.2112.6
TkA02G020800PF25061RRM_fung841210.0614.3
TkA02G020800PF07926TPR_MLP1_2891180.03814.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C895Arabidopsis thalianasp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 264.700%Swiss-ProtMedium
Q8RXD6Arabidopsis thalianasp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 142.400%Swiss-ProtMedium
A2ZAC2Oryza sativa subsp. indicasp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 262.700%Swiss-ProtMedium
Q336R3Oryza sativa subsp. japonicasp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 262.700%Swiss-ProtMedium
A2XW69Oryza sativa subsp. indicasp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 146.600%Swiss-ProtLow

JBrowse

View in Genome Browser