TkA01G641520 | RubberDandelionOmics

Gene overview

TkA01G641520

Reference: TK1151 Chr: Chr01 Coordinates: 162341799-162344129 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1610 bp · TkA01G641520|TK1151|cDNA

ATAAAATCGTGCTCCTCCATCCATACAACTTCACACAAGTGTTAAGATACCATCAAGACTCTTCAATGGGTATAATCACAAAGTCACCCCGTGGGAAGCTCTCTCTTTCTATCGTCATTGTTTTAATTTTTTCATCATCATTCATTGTTCTCTTGTACACCGAGAGAACCAACTTGCTCTCTTCGACCACCGTTTTCAATACCAAGTCTTGCGCGAAAAGGGGTTATTCCAAACCTACAAAATATTCGATACAAGATGAA...

CDS

Download CDS FASTA

1302 bp · TkA01G641520|TK1151|CDS

ATGGGTATAATCACAAAGTCACCCCGTGGGAAGCTCTCTCTTTCTATCGTCATTGTTTTAATTTTTTCATCATCATTCATTGTTCTCTTGTACACCGAGAGAACCAACTTGCTCTCTTCGACCACCGTTTTCAATACCAAGTCTTGCGCGAAAAGGGGTTATTCCAAACCTACAAAATATTCGATACAAGATGAAAGAAACGCTACAGAGGAGAATAGACTCAAGTCCATTCTCGATGATAGATTCATCTTTGAGGCAGA...

Protein

Download Protein FASTA

433 aa · TkA01G641520|TK1151|PROTEIN

MGIITKSPRGKLSLSIVIVLIFSSSFIVLLYTERTNLLSSTTVFNTKSCAKRGYSKPTKYSIQDERNATEENRLKSILDDRFIFEADECNIARGKWVYNQSFEPLYTDFSCPYLDRQVSCVKNGKPDSDYRKWEWQLDGCVLPRFDAKLALEKIRGKRVMFVGDSLQRGQWQSFVCLVEFLIPKDQKSMRRGRVHSVFSIKDHNATIEFYWAPFLIDSNTDVKIIGDPKKRILRVDSIEKHAKHWIGVDVLVYNTYVWWM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G641520`
TK1151 ID	TkA01G641520
OH-1004 ID	LXL04_000018
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 98.152 / OH-1004 98.608 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G641520

Location Chr01:162341799-162344129 (-)

Description Similar to TBL3: Protein trichome birefringence-like 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g01360`	Involved in secondary cell wall cellulose deposition.	TRICHOME BIREFRINGENCE and its homolog AT5G01360 encode plant-specific DUF231 proteins required for cellulose biosynthesis in Arabidopsis.2010 · DOI: 10.1104/pp.110.153320
`At3g55990`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Arabidopsis ESK1 encodes a novel regulator of freezing tolerance.2007 · DOI: 10.1111/j.1365-313x.2006.02994.x Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function.2009 · DOI: 10.1111/j.1365-3040.2008.01898.x ESKIMO1 is a key gene involved in water economy as well as cold acclimation and salt tolerance.2008 · DOI: 10.1186/1471-2229-8-125 ESKIMO1 disruption in Arabidopsis alters vascular tissue and impairs water transport.2011 · DOI: 10.1371/journal.pone.0016645 The Arabidopsis DUF231 domain-containing protein ESK1 mediates 2-O- and 3-O-acetylation of xylosyl residues in xylan.2013 · DOI: 10.1093/pcp/pct070 Molecular Mechanism of Polysaccharide Acetylation by the Arabidopsis Xylan O-acetyltransferase XOAT1.2020 · DOI: 10.1105/tpc.20.00028
`At2g40320`	Probable xylan acetyltransferase that plays a role in xylan acetylation and normal deposition of secondary cell walls.	Mutations of Arabidopsis TBL32 and TBL33 Affect Xylan Acetylation and Secondary Wall Deposition.2016 · DOI: 10.1371/journal.pone.0146460
`At2g40150`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0291200`	Probable xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000018 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0050826 response to freezing Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G40150

ath:AT2G40320

ath:AT3G55990

ath:AT5G01360

dosa:Os03g0291200

osa:4332503

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.537

Rank 1 · TkA01G641520 · TK1151

Cell membrane0.082

Rank 2 · TkA01G641520 · TK1151

Extracellular0.076

Rank 3 · TkA01G641520 · TK1151

Endoplasmic reticulum0.059

Rank 4 · TkA01G641520 · TK1151

Plastid0.035

Rank 5 · TkA01G641520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14416PMR5N88-140 aa

PF13839PC-Esterase142-424 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G641520	`PF14416`	PMR5N	88	140	7.1e-20	71.8
TkA01G641520	`PF13839`	PC-Esterase	142	424	5.9e-89	299.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LED3`	Arabidopsis thaliana	sp\|Q8LED3\|TBL3_ARATH Protein trichome birefringence-like 3	59.200%	Swiss-Prot	High
`Q9LY46`	Arabidopsis thaliana	sp\|Q9LY46\|TBL29_ARATH Xylan O-acetyltransferase 1	47.600%	Swiss-Prot	Medium
`F4IH21`	Arabidopsis thaliana	sp\|F4IH21\|TBL33_ARATH Protein trichome birefringence-like 33	47.800%	Swiss-Prot	Medium
`Q94K00`	Arabidopsis thaliana	sp\|Q94K00\|TBL28_ARATH Protein trichome birefringence-like 28	49.000%	Swiss-Prot	Medium
`Q10MX4`	Oryza sativa subsp. japonica	sp\|Q10MX4\|XOAT8_ORYSJ Probable xylan O-acetyltransferase 8	58.400%	Swiss-Prot	High

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