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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G637940
Reference: TK1151 Chr: Chr01 Coordinates: 161409542-161411044 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1273 bp · TkA01G637940|TK1151|cDNA

TATCCTGATAATCTGGCTATTTCTAGAACATATAAAGGCGAAAACGGGCACAAGCCACACCCTGCAGCCACTGCATAGTATCCCCAAACAGCCTCCATTCACACACACACACACACACACACACAGTGCTACGAATCAATGGACGGAACCGGAGTAGTGGCGGTGTACGGCAACGGTGCTCTGACGGAGAGCAAGAAATCACCATACTCCGTCAAGGTCGGCCTCGCTCAGATGCTTCGTGGCGGCGTCATCATGGACGT...

CDS

Download CDS FASTA

927 bp · TkA01G637940|TK1151|CDS

ATGGACGGAACCGGAGTAGTGGCGGTGTACGGCAACGGTGCTCTGACGGAGAGCAAGAAATCACCATACTCCGTCAAGGTCGGCCTCGCTCAGATGCTTCGTGGCGGCGTCATCATGGACGTCGTCAACGCAGAACAAGCCCGCATAGCCGAAGAAGCCGGCGCCTGTGCTGTCATGGCCCTAGAGCGTGTCCCAGCAGACATCCGTGCGCAAGGCGGCGTTGCTCGGATGAGCGACCCACAACTGATAAAGGAAATCAA...

Protein

Download Protein FASTA

308 aa · TkA01G637940|TK1151|PROTEIN

MDGTGVVAVYGNGALTESKKSPYSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADDMNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLANMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G637940
TK1151 IDTkA01G637940
OH-1004 IDLXL04_000062
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G637940
LocationChr01:161409542-161411044 (-)
DescriptionSimilar to PDX1: Probable pyridoxal 5'-phosphate synthase subunit PDX1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01410 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. No verified direct reference in this release
At2g38230 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0100200 Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000062 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006520 amino acid metabolic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0006982 response to lipid hydroperoxide Biological Process
GO:0008615 pyridoxine biosynthetic process Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010224 response to UV-B Biological Process
GO:0010335 response to non-ionic osmotic stress Biological Process
GO:0015994 chlorophyll metabolic process Biological Process
GO:0042538 hyperosmotic salinity response Biological Process
GO:0042823 pyridoxal phosphate biosynthetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
KEGG gene cross-reference
ath:AT2G38230
ath:AT5G01410
dosa:Os07g0100200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.715
Rank 1 · TkA01G637940 · TK1151
Nucleus0.296
Rank 2 · TkA01G637940 · TK1151
Cell membrane0.101
Rank 3 · TkA01G637940 · TK1151
Endoplasmic reticulum0.061
Rank 4 · TkA01G637940 · TK1151
Mitochondrion0.045
Rank 5 · TkA01G637940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01680SOR_SNZ24-228 aa
PF00218IGPS35-112 aa
PF03060NMO38-96 aa
PF05690ThiG46-128 aa
PF01207Dus46-113 aa
PF00977His_biosynth75-97 aa
PF04131NanE76-118 aa
PF05690ThiG136-156 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G637940PF01680SOR_SNZ242284.1e-112373.7
TkA01G637940PF00218IGPS351120.02314.6
TkA01G637940PF03060NMO38960.09612.8
TkA01G637940PF05690ThiG461288.6e-1142.4
TkA01G637940PF01207Dus461136.8e-0626.1
TkA01G637940PF00977His_biosynth75970.04414.0
TkA01G637940PF04131NanE761180.01115.6
TkA01G637940PF05690ThiG1361568.6e-1142.4
TkA01G637940PF01207Dus2052776.8e-0626.1
TkA01G637940PF05690ThiG2082728.6e-1142.4
TkA01G637940PF03060NMO2112530.09612.8
TkA01G637940PF04131NanE2212550.01115.6
TkA01G637940PF00218IGPS2232650.02314.6
TkA01G637940PF00977His_biosynth2242550.04414.0
TkA01G637940PF17935TetR_C_272512830.0002122.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L940Arabidopsis thalianasp|Q8L940|PDX13_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.392.600%Swiss-ProtHigh
O80448Arabidopsis thalianasp|O80448|PDX11_ARATH Pyridoxal 5'-phosphate synthase subunit PDX1.189.300%Swiss-ProtHigh
Q69LA6Oryza sativa subsp. japonicasp|Q69LA6|PDX11_ORYSJ Probable pyridoxal 5'-phosphate synthase subunit PDX1.186.700%Swiss-ProtHigh

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