TkA01G637140 | RubberDandelionOmics

Gene overview

TkA01G637140

Reference: TK1151 Chr: Chr01 Coordinates: 161183240-161184870 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

522 bp · TkA01G637140|TK1151|cDNA

ATGTTGGAAGAACAAAAGACAAAGGATGTGTTATGGACACCATCAAAAGTAATATCACGTTTGGGGAAGGAAATTAATAACGAGAGTTCATATCTATATTGGGCATATAAGAACGACATTCCAGTATTTTGCCCTGGTCTAACCGACGGCTCTCTCGGCGACATGTTATATTTCCATTCATTCCGAAACCCCGGTCTTGTTATCGATGTAGTACAAGATATTCGGACTGTTAACAGCGAGGCTGTGCATGCAAACCCTAG...

CDS

Download CDS FASTA

522 bp · TkA01G637140|TK1151|CDS

ATGTTGGAAGAACAAAAGACAAAGGATGTGTTATGGACACCATCAAAAGTAATATCACGTTTGGGGAAGGAAATTAATAACGAGAGTTCATATCTATATTGGGCATATAAGAACGACATTCCAGTATTTTGCCCTGGTCTAACCGACGGCTCTCTCGGCGACATGTTATATTTCCATTCATTCCGAAACCCCGGTCTTGTTATCGATGTAGTACAAGATATTCGGACTGTTAACAGCGAGGCTGTGCATGCAAACCCTAG...

Protein

Download Protein FASTA

173 aa · TkA01G637140|TK1151|PROTEIN

MLEEQKTKDVLWTPSKVISRLGKEINNESSYLYWAYKNDIPVFCPGLTDGSLGDMLYFHSFRNPGLVIDVVQDIRTVNSEAVHANPRKTGMKILGGGLPKHHICNADMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGEIRSNAKSVKVLIIKNKLNVFLFFFYVLNDGC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G637140`
TK1151 ID	TkA01G637140
OH-1004 ID	LXL04_018618
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.400
Protein coverage (%)	TK1151 87.861 / OH-1004 20.680 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G637140

Location Chr01:161183240-161184870 (-)

Description Similar to DHS1: Deoxyhypusine synthase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05920`	Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018618 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008216 spermidine metabolic process Biological Process

GO:0009553 embryo sac development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0034038 deoxyhypusine synthase activity Molecular Function

KEGG gene cross-reference

ag:CAB65461

ath:AT5G05920

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.630

Rank 1 · TkA01G637140 · TK1151

Nucleus0.406

Rank 2 · TkA01G637140 · TK1151

Mitochondrion0.053

Rank 3 · TkA01G637140 · TK1151

Endoplasmic reticulum0.040

Rank 4 · TkA01G637140 · TK1151

Lysosome / Vacuole0.037

Rank 5 · TkA01G637140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01916DS4-153 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G637140	`PF01916`	DS	4	153	2.6e-60	204.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FI94`	Arabidopsis thaliana	sp\|Q9FI94\|DHYS_ARATH Deoxyhypusine synthase	84.900%	Swiss-Prot	High

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