LXL04_018618 | RubberDandelionOmics

Gene overview

LXL04_018618

Reference: OH-1004 Chr: Chr04 Coordinates: 15669939-15675585 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2241 bp · LXL04_018618|LXL04_018618|OH1004|cDNA

CAGCAGCTCAGAGTTGCAGATATGGGGGAAGCCGTGAAAGAGGCAGGAGTGATCGAGAATCTAAGATCGGTGGTGTTCAAAGAATCGGAGAGCTTAGAAGGCAGTTGTGCTAAAATCCAGGGCTACGATTTCAACAACGGGATTGATTATTCACAGATTCTCAAATCCCTAATTTCCACTGGCTTTCAAGCTTCTAACCTCGGTGATGCCATTGAAACAGTTAATCAAATGTTAGACTGGAGGCTTTCTCATGAGCAAGT...

CDS

Download CDS FASTA

2208 bp · LXL04_018618|LXL04_018618|OH1004|CDS

ATGGGGGAAGCCGTGAAAGAGGCAGGAGTGATCGAGAATCTAAGATCGGTGGTGTTCAAAGAATCGGAGAGCTTAGAAGGCAGTTGTGCTAAAATCCAGGGCTACGATTTCAACAACGGGATTGATTATTCACAGATTCTCAAATCCCTAATTTCCACTGGCTTTCAAGCTTCTAACCTCGGTGATGCCATTGAAACAGTTAATCAAATGTTAGACTGGAGGCTTTCTCATGAGCAAGTAACTGAAGATTGCAGTGAAGA...

Protein

Download Protein FASTA

735 aa · LXL04_018618|LXL04_018618|OH1004|PROTEIN

MGEAVKEAGVIENLRSVVFKESESLEGSCAKIQGYDFNNGIDYSQILKSLISTGFQASNLGDAIETVNQMLDWRLSHEQVTEDCSEEESKPEYRESVKCKIFLGFTSNLISSGVRDIIRYLTQHHMVDVIVTTTGGIEEDLIKCLADTYRGEFSLPGASLRSKGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLEEQKTKDVLWTPSKVISRLGKEINNESSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRNPGLVID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018618`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018618

Location Chr04:15669939-15675585 (-)

Description Similar to DHS1: Deoxyhypusine synthase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05920`	Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018618 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0008216 spermidine metabolic process Biological Process

GO:0009553 embryo sac development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0034038 deoxyhypusine synthase activity Molecular Function

KEGG gene cross-reference

ag:CAB65461

ath:AT5G05920

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.806

Rank 1 · LXL04_018618 · OH-1004

Nucleus0.224

Rank 2 · LXL04_018618 · OH-1004

Cell membrane0.081

Rank 3 · LXL04_018618 · OH-1004

Mitochondrion0.077

Rank 4 · LXL04_018618 · OH-1004

Endoplasmic reticulum0.054

Rank 5 · LXL04_018618 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01916.24DS46-357 aa

PF01916.24DS413-724 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018618	`PF01916.24`	DS	46	357	6e-246	814.1
LXL04_018618	`PF01916.24`	DS	413	724	6e-246	814.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FI94`	Arabidopsis thaliana	Deoxyhypusine synthase	82.073%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card