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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G635940
Reference: TK1151 Chr: Chr01 Coordinates: 160873568-160877346 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3709 bp · TkA01G635940|TK1151|cDNA

TAAAAATAGAAAGAGGAAATATATAGAAGAAGAAATTGCGAAAAGGAAAAGGGTGTCTTCTCCCTCCGGCATCCATCATCACCAATAACTCCACCAGCCATAAAGACGGCACACTCCCACACACCAGACAACTCCTTTTCTTTCGCCGTTTTCTTCTCTCCTCTCATCTTCTTCTTCAGATGATCTACAGCCCCGAATATAAAACACATTCTGTTCTTTTCTCACCCCAATTTCACGCCTCAGATCATTTTCCGGCGTAA...

CDS

Download CDS FASTA

2946 bp · TkA01G635940|TK1151|CDS

ATGTGGACGAAGACGACGCCGTTTCAAGTGATTGCTGCTGTTCTGTTGTTATTTTCGCCGGAGACGACGATTCTTCCGGTGTACTCTTTGAATGTAGCCCTTAACGACGACGTTTTGGGGCTTATGGTGTTTAAAGCAGACATACAAGACCCGTTCTTTAGACTGTCAACATGGAAGGAAGAAGACGACAGTGCTTGTTTATGGAGCGGAGTTACATGCGACCCGTATTCGAAGCGGGTAACGGAGCTCCATTTAGATGG...

Protein

Download Protein FASTA

981 aa · TkA01G635940|TK1151|PROTEIN

MWTKTTPFQVIAAVLLLFSPETTILPVYSLNVALNDDVLGLMVFKADIQDPFFRLSTWKEEDDSACLWSGVTCDPYSKRVTELHLDGFSLSGRISKGLLRLQFLQTLSLSRNNFTGLIGNPILSQLIKSLQVIDLSENGFFGSIPDQLFMECGSIRSLSLAKNKLTGQIPDAIASCSTLQNVDLSSNQLSGGLPNNIWSLTSLRSIDFSNNYLDGEIPHDKIETMFDLRVLNLSSNNFSGELPEKIGECLLLKSVDFSNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G635940
TK1151 IDTkA01G635940
OH-1004 IDLXL04_000083
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G635940
LocationChr01:160873568-160877346 (+)
DescriptionSimilar to IRK: Probable LRR receptor-like serine/threonine-protein kinase IRK
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g56370 Probable LRR receptor-like serine/threonine-protein kinase IRK. No verified direct reference in this release
At5g01890 Leucine-rich repeat receptor-like protein kinase that may play a role in vascular tissues development. No verified direct reference in this release
At3g28040 Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040. No verified direct reference in this release
At1g12460 Probable LRR receptor-like serine/threonine-protein kinase At1g12460. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8BB68 LRR receptor kinase involved in defense response. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000083 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0048364 root development Biological Process
GO:0051302 regulation of cell division Biological Process
GO:0090511 periclinal cell division Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G12460
ath:AT3G28040
ath:AT3G56370
ath:AT5G01890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.866
Rank 1 · TkA01G635940 · TK1151
Endoplasmic reticulum0.090
Rank 2 · TkA01G635940 · TK1151
Cytoplasm0.062
Rank 3 · TkA01G635940 · TK1151
Nucleus0.044
Rank 4 · TkA01G635940 · TK1151
Lysosome / Vacuole0.028
Rank 5 · TkA01G635940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_234-74 aa
PF24758LRR_At5g5637078-163 aa
PF00560LRR_180-98 aa
PF13855LRR_880-117 aa
PF12799LRR_480-114 aa
PF23598LRR_1494-115 aa
PF29594LRR_SKP296-111 aa
PF13516LRR_6102-116 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G635940PF08263LRRNT_234741e-0939.2
TkA01G635940PF24758LRR_At5g56370781630.0116.2
TkA01G635940PF00560LRR_180981.3e-50159.1
TkA01G635940PF13855LRR_8801171.2e-32112.1
TkA01G635940PF12799LRR_4801142.6e-2382.2
TkA01G635940PF23598LRR_14941153.1e-29102.5
TkA01G635940PF29594LRR_SKP2961110.3210.9
TkA01G635940PF13516LRR_61021160.0315.1
TkA01G635940PF00560LRR_11041201.3e-50159.1
TkA01G635940PF12799LRR_41041442.6e-2382.2
TkA01G635940PF23286LRR_131141852.7e-0524.7
TkA01G635940PF25013LRR_Zer-11262096.3e-0627.1
TkA01G635940PF13306LRR_51282110.01316.1
TkA01G635940PF00560LRR_11291481.3e-50159.1
TkA01G635940PF13855LRR_81291891.2e-32112.1
TkA01G635940PF13516LRR_61291390.0315.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LY03Arabidopsis thalianasp|Q9LY03|IRK_ARATH Probable LRR receptor-like serine/threonine-protein kinase IRK65.400%Swiss-ProtLow
Q9LZV7Arabidopsis thalianasp|Q9LZV7|PXC2_ARATH Leucine-rich repeat receptor-like protein kinase PXC266.900%Swiss-ProtHigh
Q9LRT1Arabidopsis thalianasp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g2804041.700%Swiss-ProtLow
C0LGE4Arabidopsis thalianasp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g1246043.600%Swiss-ProtLow
B8BB68Oryza sativa subsp. indicasp|B8BB68|BAK1_ORYSI LRR receptor kinase BAK133.200%Swiss-ProtLow

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