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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G620610
Reference: TK1151 Chr: Chr01 Coordinates: 156596909-156599056 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1985 bp · TkA01G620610|TK1151|cDNA

TATTTATTTCATACCACATGCTTCTTTACCAGTTTTCTTTATCCATCTCCCAGAAAGATGATCTCTTTCACAACCTCTTGCCTCCTCTTGCCTGCTTCCTCTCCTGAATTTTAGGGGTTTCTTAGATTCTTGGTATGTTTGAATAATTTGTGGGGTTTTCGGCGATAGAACATCGTAATTTTCGGTAAATTCTTCTTGGTGTTCAATGGATACTTTGTTGAGGACTCACAGTTCGTTCGAATTTCTCCACCCGCTTCACA...

CDS

Download CDS FASTA

1515 bp · TkA01G620610|TK1151|CDS

ATGGATACTTTGTTGAGGACTCACAGTTCGTTCGAATTTCTCCACCCGCTTCACAGATTTGCAGGAAATCTGACCAATTTGAGTTCATCCAAGTCTCAAATTCACGAACCTAGATTAAGCCCTAAAAAATCCCATCTAAAATGGAGTCATGGAGGTTGTGTTAAGGCCAGTAGTAGTGCTCTACTAGAACTCGTACCGGAAATCAAGAAAGAAAACCTCGATTTCGAGCTTCCTCTCTATGACCCTTCAAAGGGTGTCGT...

Protein

Download Protein FASTA

504 aa · TkA01G620610|TK1151|PROTEIN

MDTLLRTHSSFEFLHPLHRFAGNLTNLSSSKSQIHEPRLSPKKSHLKWSHGGCVKASSSALLELVPEIKKENLDFELPLYDPSKGVVVDLVVVGGGPSGLAVAQQVSEAGLTVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSSAVVYIDENSTKNLGRPYGRVNRKQLKSKMLKKCISNGVKFHQAKVIKVIHEELKSLLICNDGVTIQATLVLDATGFSRSLVQYDKPYNPGYQVAYGILAEVEEHPFDVDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G620610
TK1151 IDTkA01G620610
OH-1004 IDLXL04_000313
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G620610
LocationChr01:156596909-156599056 (+)
DescriptionSimilar to LCY1: Lycopene beta cyclase, chloroplastic/chromoplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g10230 Involved in carotenoid biosynthesis.
Lutein accumulation in the absence of zeaxanthin restores nonphotochemical quenching in the Arabidopsis thaliana npq1 mutant.2009 · DOI: 10.1105/tpc.109.066571

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000313 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006744 ubiquinone biosynthetic process Biological Process
GO:0016117 carotenoid biosynthetic process Biological Process
GO:0016123 xanthophyll biosynthetic process Biological Process
GO:1901812 beta-carotene biosynthetic process Biological Process
GO:1901818 beta-zeacarotene biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009509 chromoplast Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0046862 chromoplast membrane Cellular Component
GO:0016491 oxidoreductase activity Molecular Function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function
KEGG gene cross-reference
ag:CAA57386
ag:CAA60119
ath:AT3G10230
cann:107869983
nta:107763207
sly:544104
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.978
Rank 1 · TkA01G620610 · TK1151
Mitochondrion0.031
Rank 2 · TkA01G620610 · TK1151
Cytoplasm0.019
Rank 3 · TkA01G620610 · TK1151
Nucleus0.018
Rank 4 · TkA01G620610 · TK1151
Peroxisome0.014
Rank 5 · TkA01G620610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01946Thi486-117 aa
PF07992Pyr_redox_288-228 aa
PF05834Lycopene_cycl89-481 aa
PF01266DAO89-119 aa
PF12831FAD_oxidored89-225 aa
PF03486HI0933_like89-121 aa
PF00890FAD_binding_289-117 aa
PF01494FAD_binding_389-117 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G620610PF01946Thi4861173.2e-0524.0
TkA01G620610PF07992Pyr_redox_2882284.4e-0730.3
TkA01G620610PF05834Lycopene_cycl894811.7e-146488.9
TkA01G620610PF01266DAO891198.3e-0626.3
TkA01G620610PF12831FAD_oxidored892250.0005820.0
TkA01G620610PF03486HI0933_like891210.0008119.7
TkA01G620610PF00890FAD_binding_2891170.0214.8
TkA01G620610PF01494FAD_binding_3891170.03314.1
TkA01G620610PF01134GIDA892250.07612.8
TkA01G620610PF00070Pyr_redox901230.0009320.4
TkA01G620610PF04820Trp_halogenase901100.001917.8
TkA01G620610PF13738Pyr_redox_3911120.01315.5
TkA01G620610PF13454NAD_binding_9911190.01715.8
TkA01G620610PF13450NAD_binding_8921190.004118.1
TkA01G620610PF03486HI0933_like1612250.0008119.7
TkA01G620610PF01266DAO1682318.3e-0626.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38933Arabidopsis thalianasp|Q38933|LCYB_ARATH Lycopene beta cyclase, chloroplastic77.100%Swiss-ProtHigh

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