TkA01G609960 | RubberDandelionOmics

Gene overview

TkA01G609960

Reference: TK1151 Chr: Chr01 Coordinates: 153755115-153757716 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1499 bp · TkA01G609960|TK1151|cDNA

ATTTTTGTGAACCCCCAAAGTTACATGCCTCCTACTTCGAAAAGTTTGGCAACAGAAAATCACGGGTCGACCGCACTCCTGTTGTCACGAGCTCCGACGACCGACGCCACCAAAACTAGCGATCGACGTTTCCTCCTCCTTCACATCCTACCTCCAATCATCCACCGTCAACCCAAACGCAGTTGTTCCGGCATTTGACTATGAATCTACTCCAAGAAGAAGGATTACAACTTAGGGAAGTTCAAAGACTAGAAGGTCAC...

CDS

Download CDS FASTA

1059 bp · TkA01G609960|TK1151|CDS

ATGAATCTACTCCAAGAAGAAGGATTACAACTTAGGGAAGTTCAAAGACTAGAAGGTCACACCGATAGGGTATGGGGTCTCGCTTGGAATCCGGCCACTGGCACTGCTGCTATACCTGCCATGCTCGCTTCATGCGGCGGCGATAAGACTGTTCGTATCTGGCAACAACGAAGCCCATCCTCCACGTCATTCGATTGCAAGGCAGTGTTAGAAGAGACTCATACCCGGACAGTTAGATCATGTGCCTGGGAACCATCTGG...

Protein

Download Protein FASTA

352 aa · TkA01G609960|TK1151|PROTEIN

MNLLQEEGLQLREVQRLEGHTDRVWGLAWNPATGTAAIPAMLASCGGDKTVRIWQQRSPSSTSFDCKAVLEETHTRTVRSCAWEPSGKKLATASFDATTAILEQNGNDFDCVSTLEGHENEVKSVSWNASGSLLATCSRDKCVWIWEVLPGDEYDCVSVLQGHTQDVKMVQWHPTVDVLFSCSYDNTIKVWAEDGDSDDWRCVQTLGESNNGHTSTVWALAFNKTGDKMATCSDDLTIKIWGVDIASLQSGDDNASWRHL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G609960`
TK1151 ID	TkA01G609960
OH-1004 ID	LXL04_000474
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G609960

Location Chr01:153755115-153757716 (-)

Description Similar to CIA1: Protein CIA1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26060`	Essential component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000474 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016226 iron-sulfur cluster assembly Biological Process

GO:0051604 protein maturation Biological Process

GO:0005634 nucleus Cellular Component

GO:0097361 cytosolic [4Fe-4S] assembly targeting complex Cellular Component

KEGG gene cross-reference

ath:AT2G26060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.591

Rank 1 · TkA01G609960 · TK1151

Nucleus0.507

Rank 2 · TkA01G609960 · TK1151

Lysosome / Vacuole0.079

Rank 3 · TkA01G609960 · TK1151

Cell membrane0.078

Rank 4 · TkA01G609960 · TK1151

Golgi apparatus0.065

Rank 5 · TkA01G609960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25391WD40_Gbeta9-292 aa

PF24797Beta-prop_WDR35_TULP_N10-101 aa

PF23609Beta-prop_EIPR111-54 aa

PF25175Beta-prop_WDR512-148 aa

PF25174Beta-prop_THOC312-62 aa

PF00400WD4013-54 aa

PF24814WD40_Prp1913-148 aa

PF25173Beta-prop_WDR3_1st13-55 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G609960	`PF25391`	WD40_Gbeta	9	292	7.5e-12	45.6
TkA01G609960	`PF24797`	Beta-prop_WDR35_TULP_N	10	101	1.8e-13	51.1
TkA01G609960	`PF23609`	Beta-prop_EIPR1	11	54	1.8e-13	51.3
TkA01G609960	`PF25175`	Beta-prop_WDR5	12	148	8.4e-66	222.9
TkA01G609960	`PF25174`	Beta-prop_THOC3	12	62	1.7e-51	175.6
TkA01G609960	`PF00400`	WD40	13	54	1.4e-56	187.2
TkA01G609960	`PF24814`	WD40_Prp19	13	148	1e-38	133.7
TkA01G609960	`PF25173`	Beta-prop_WDR3_1st	13	55	1.3e-38	133.3
TkA01G609960	`PF24807`	WD40_CDC20-Fz	13	89	1.2e-32	114.1
TkA01G609960	`PF23381`	Beta-prop_IFT122_1st	14	103	1.3e-48	166.4
TkA01G609960	`PF25172`	Beta-prop_WDR3_2nd	14	241	7e-28	98.4
TkA01G609960	`PF24817`	WD40_WDHD1_1st	14	148	1.3e-26	94.2
TkA01G609960	`PF24105`	Beta-prop_CAF1B_HIR1	14	32	4.3e-25	89.2
TkA01G609960	`PF23869`	Beta-prop_WDR75_1st	14	55	2.1e-13	51.0
TkA01G609960	`PF24805`	EIF3I	17	93	2.2e-20	73.8
TkA01G609960	`PF23419`	WD40_RFWD3	20	87	4.9e-05	23.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80990`	Arabidopsis thaliana	sp\|O80990\|CIA1_ARATH Protein CIA1	72.900%	Swiss-Prot	High

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