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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G585380
Reference: TK1151 Chr: Chr01 Coordinates: 147224416-147226071 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

886 bp · TkA01G585380|TK1151|cDNA

TAAAACCCTAGTCCTCTTACTCGCAGCCGTGAGAAGAAAATGGTGTCGCTGAAGCTACAGAAGAGGCTTGCCGCGAGCGTCCTCAAGTGCGGTAGAGGAAAGGTTTGGCTCGATCCCAATGAAGGGAATGAGATATCCATGGCCAACTCTCGTCAGAACATCAGAAAGTTGGTGAAGGATGGATTCATCATCAGGAAGCCAACGAAGATCCACTCTAGGTCAAGAGCTCGTCGCATGAAGGAGGCAAAGAGAAAGGGTCG...

CDS

Download CDS FASTA

630 bp · TkA01G585380|TK1151|CDS

ATGGTGTCGCTGAAGCTACAGAAGAGGCTTGCCGCGAGCGTCCTCAAGTGCGGTAGAGGAAAGGTTTGGCTCGATCCCAATGAAGGGAATGAGATATCCATGGCCAACTCTCGTCAGAACATCAGAAAGTTGGTGAAGGATGGATTCATCATCAGGAAGCCAACGAAGATCCACTCTAGGTCAAGAGCTCGTCGCATGAAGGAGGCAAAGAGAAAGGGTCGTCACTCTGGATATGGTAAGCGAAAGGGTACCCGAGAGGC...

Protein

Download Protein FASTA

209 aa · TkA01G585380|TK1151|PROTEIN

MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQGPQERAPVAAVPAAAPPAQASKKSKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G585380
TK1151 IDTkA01G585380
OH-1004 IDLXL04_037129
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G585380
LocationChr01:147224416-147226071 (+)
DescriptionSimilar to RPL19B: 60S ribosomal protein L19-2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g02230 Large ribosomal subunit protein eL19y. No verified direct reference in this release
At1g02780 Large ribosomal subunit protein eL19x. No verified direct reference in this release
At3g16780 Large ribosomal subunit protein eL19z. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037129 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002181 cytoplasmic translation Biological Process
GO:0006412 translation Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0022625 cytosolic large ribosomal subunit Cellular Component
GO:0022626 cytosolic ribosome Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0003735 structural constituent of ribosome Molecular Function
KEGG gene cross-reference
ath:AT1G02780
ath:AT3G16780
ath:AT4G02230
dme:Dmel_CG2746
rno:81767
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.897
Rank 1 · TkA01G585380 · TK1151
Nucleus0.226
Rank 2 · TkA01G585380 · TK1151
Endoplasmic reticulum0.108
Rank 3 · TkA01G585380 · TK1151
Mitochondrion0.017
Rank 4 · TkA01G585380 · TK1151
Cell membrane0.014
Rank 5 · TkA01G585380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01280Ribosomal_L19e4-54 aa
PF12840HTH_2029-50 aa
PF25476Ribosomal_L19e_C56-146 aa
PF29832SOV1_middle93-168 aa
PF12840HTH_2098-108 aa
PF22901dsrm_Ferlin104-153 aa
PF04382SAB122-156 aa
PF20543CowN123-171 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G585380PF01280Ribosomal_L19e4542.9e-2795.0
TkA01G585380PF12840HTH_2029500.08413.6
TkA01G585380PF25476Ribosomal_L19e_C561464.1e-35120.6
TkA01G585380PF29832SOV1_middle931680.007517.0
TkA01G585380PF12840HTH_20981080.08413.6
TkA01G585380PF22901dsrm_Ferlin1041530.9310.7
TkA01G585380PF04382SAB1221560.09613.5
TkA01G585380PF20543CowN1231710.1213.6
TkA01G585380PF16228DUF48871412090.03215.1
TkA01G585380PF22901dsrm_Ferlin1451820.9310.7
TkA01G585380PF25476Ribosomal_L19e_C1691734.1e-35120.6
TkA01G585380PF04382SAB1711850.09613.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P49693Arabidopsis thalianasp|P49693|RL193_ARATH Large ribosomal subunit protein eL19y85.900%Swiss-ProtHigh
Q9SRX2Arabidopsis thalianasp|Q9SRX2|RL191_ARATH Large ribosomal subunit protein eL19x90.700%Swiss-ProtHigh
Q9LUQ6Arabidopsis thalianasp|Q9LUQ6|RL192_ARATH Large ribosomal subunit protein eL19z91.400%Swiss-ProtHigh

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