TkA01G569140 | RubberDandelionOmics

Gene overview

TkA01G569140

Reference: TK1151 Chr: Chr01 Coordinates: 143230025-143232233 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1319 bp · TkA01G569140|TK1151|cDNA

CAAAACTTAAAATTTTGGAATATAACCTCCAAGTGGGTCATATCACATATGTCCTGCAACCTGGGCTCCTTTCGAACCCTAAAAGACCGTGAACTTCTTCCAAACTAATGTTAGCCCAGAAGTCCTCCACCTTCCCCTTATCTCTCAGAATTCGAACAATCAACAGCGCAAAAATGTCGATTATACATCAAAATTTCTTCACGAACAACCTTCAATGGGTTCCCAGTACACATCCACCCAATACTCTCAATCATACTCGC...

CDS

Download CDS FASTA

1077 bp · TkA01G569140|TK1151|CDS

ATGTTAGCCCAGAAGTCCTCCACCTTCCCCTTATCTCTCAGAATTCGAACAATCAACAGCGCAAAAATGTCGATTATACATCAAAATTTCTTCACGAACAACCTTCAATGGGTTCCCAGTACACATCCACCCAATACTCTCAATCATACTCGCCCTATTACTCGAATCTTCACATCTTCTACACGATCCTCATCATTAGACAAGAGGTTTAACAGCAGATTATCGCTCAGTACAAACGGTGGCTATGTGAAGTCATCGTT...

Protein

Download Protein FASTA

358 aa · TkA01G569140|TK1151|PROTEIN

MLAQKSSTFPLSLRIRTINSAKMSIIHQNFFTNNLQWVPSTHPPNTLNHTRPITRIFTSSTRSSSLDKRFNSRLSLSTNGGYVKSSFDYNNHNGGNANNGHYEYEKGLLGNSSHQYPRPTEVPWTKELCNSVQLIGNVGTPVEFKQLSSGKVLAWCRLAVKKSSTDTTWISLTFWDDLAHIASKYVEKGQQIYVSGRIVSDTVDSDDGKQQTYYKVVVQQLNFVEKSPLSNEQDFNYNSNSNSNSNSNSNSNSNSSSMTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G569140`
TK1151 ID	TkA01G569140
OH-1004 ID	LXL04_000990
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G569140

Location Chr01:143230025-143232233 (+)

Description Similar to OSB4: Protein OSB4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g20010`	Binds preferentially single-stranded DNA.	No verified direct reference in this release
`At1g47720`	Regulates mitochondrial DNA recombination.	The plant-specific ssDNA binding protein OSB1 is involved in the stoichiometric transmission of mitochondrial DNA in Arabidopsis.2006 · DOI: 10.1105/tpc.106.042028
`At5g44785`	Binds single-stranded DNA.	No verified direct reference in this release
`At1g31010`	Binds single-stranded DNA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000990 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000001 mitochondrion inheritance Biological Process

GO:0006260 DNA replication Biological Process

GO:0045910 negative regulation of DNA recombination Biological Process

GO:0090297 positive regulation of mitochondrial DNA replication Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0042644 chloroplast nucleoid Cellular Component

GO:0042645 mitochondrial nucleoid Cellular Component

GO:0048046 apoplast Cellular Component

GO:0003697 single-stranded DNA binding Molecular Function

GO:0008047 enzyme activator activity Molecular Function

KEGG gene cross-reference

ath:AT1G31010

ath:AT1G47720

ath:AT4G20010

ath:AT5G44785

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.792

Rank 1 · TkA01G569140 · TK1151

Plastid0.126

Rank 2 · TkA01G569140 · TK1151

Nucleus0.073

Rank 3 · TkA01G569140 · TK1151

Cytoplasm0.047

Rank 4 · TkA01G569140 · TK1151

Cell membrane0.008

Rank 5 · TkA01G569140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30940OSB_SSB127-224 aa

PF00436SSB130-223 aa

PF29066OB_POT1_N161-202 aa

PF01336tRNA_anti-codon167-206 aa

PF30937OSB_PDF281-333 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G569140	`PF30940`	OSB_SSB	127	224	1.3e-24	86.9
TkA01G569140	`PF00436`	SSB	130	223	2.6e-19	69.9
TkA01G569140	`PF29066`	OB_POT1_N	161	202	0.077	13.4
TkA01G569140	`PF01336`	tRNA_anti-codon	167	206	0.11	13.1
TkA01G569140	`PF30937`	OSB_PDF	281	333	7e-21	74.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GXH3`	Arabidopsis thaliana	sp\|Q8GXH3\|OSB2_ARATH Protein OSB2, chloroplastic	26.600%	Swiss-Prot	Low
`Q9SX99`	Arabidopsis thaliana	sp\|Q9SX99\|OSB1_ARATH Protein OSB1, mitochondrial	29.600%	Swiss-Prot	Low
`Q8GWJ4`	Arabidopsis thaliana	sp\|Q8GWJ4\|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial	27.800%	Swiss-Prot	Low
`Q9FYJ2`	Arabidopsis thaliana	sp\|Q9FYJ2\|OSB4_ARATH Protein OSB4, chloroplastic	52.800%	Swiss-Prot	Low

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